Analysis of interatomic Contacts of Structural Units in PDB entry:
8DS8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8DS8 entry

There are 6 chains in PDB entry 8DS8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 2785VAL 2966
C
 LYS 4ARG 8
C
 SER 10THR 11
B
 ARG 2785VAL 2966
D
 LYS 4ARG 8
D
 SER 10THR 11
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 8DS8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2861 2865Right-handed 310
Helix 2
AA2
A
2890 2894Right-handed alpha
Helix 3
AA3
A
2897 2901Right-handed alpha
Helix 4
AA4
A
2925 2934Right-handed alpha
Helix 5
AA5
B
2861 2865Right-handed 310
Helix 6
AA6
B
2897 2901Right-handed alpha
Helix 7
AA7
B
2925 2933Right-handed alpha
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There are 6 sheets in PDB entry 8DS8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2789 2790first strand
Strand 2
A
2811 2814anti-parallel
Strand 3
A
2817 2820anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2796 2798first strand
Strand 2
A
2806 2809anti-parallel
Strand 3
A
2837 2847anti-parallel
Strand 4
A
2824 2827anti-parallel
Strand 5
A
2917 2924anti-parallel
Strand 6
A
2944 2951parallel
Strand 7
A
2958 2959anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2796 2798first strand
Strand 2
A
2806 2809anti-parallel
Strand 3
A
2837 2847anti-parallel
Strand 4
A
2851 2860anti-parallel
Strand 5
A
2902 2913anti-parallel
Strand 6
A
2944 2951parallel
Strand 7
A
2958 2959anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2789 2790first strand
Strand 2
B
2811 2814anti-parallel
Strand 3
B
2817 2820anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2807 2809first strand
Strand 2
B
2838 2847anti-parallel
Strand 3
B
2824 2827anti-parallel
Strand 4
B
2917 2924anti-parallel
Strand 5
B
2944 2951parallel
Strand 6
B
2851 2858first strand
Strand 7
B
2909 2913anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2902 2905first strand
Strand 2
B
2944 2951parallel
Strand 3
B
2917 2924parallel
Strand 4
B
2824 2827anti-parallel
Strand 5
B
2838 2847anti-parallel
Strand 6
B
2958 2959first strand
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