Analysis of interatomic Contacts of Structural Units in PDB entry:
8DSA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8DSA entry

There are 6 chains in PDB entry 8DSA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 15ARG 345
B
 PRO 15ARG 345
C
 PRO 15TRP 411
D
 PRO 15LEU 407
E
 PRO 15ARG 345
F
 ALA 16SER 345
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 57 helices in PDB entry 8DSA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
22 49Right-handed alpha
Helix 2
AA2
A
102 117Right-handed alpha
Helix 3
AA3
A
119 141Right-handed alpha
Helix 4
AA4
A
259 287Right-handed alpha
Helix 5
AA5
A
314 345Right-handed alpha
Helix 6
AA6
B
15 21Right-handed 310
Helix 7
AA7
B
22 50Right-handed alpha
Helix 8
AA8
B
102 116Right-handed alpha
Helix 9
AA9
B
119 141Right-handed alpha
Helix 10
AB1
B
141 146Right-handed alpha
Helix 11
AB2
B
259 286Right-handed alpha
Helix 12
AB3
B
287 289Right-handed 310
Helix 13
AB4
B
314 345Right-handed alpha
Helix 14
AB5
C
16 21Right-handed 310
Helix 15
AB6
C
22 49Right-handed alpha
Helix 16
AB7
C
102 117Right-handed alpha
Helix 17
AB8
C
119 141Right-handed alpha
Helix 18
AB9
C
141 146Right-handed alpha
Helix 19
AC1
C
146 166Right-handed alpha
Helix 20
AC2
C
166 175Right-handed alpha
Helix 21
AC3
C
233 256Right-handed alpha
Helix 22
AC4
C
258 286Right-handed alpha
Helix 23
AC5
C
287 289Right-handed 310
Helix 24
AC6
C
315 346Right-handed alpha
Helix 25
AC7
C
353 360Right-handed alpha
Helix 26
AC8
C
369 383Right-handed alpha
Helix 27
AC9
C
383 395Right-handed alpha
Helix 28
AD1
C
396 411Right-handed alpha
Helix 29
AD2
D
17 21Right-handed 310
Helix 30
AD3
D
22 49Right-handed alpha
Helix 31
AD4
D
102 116Right-handed alpha
Helix 32
AD5
D
119 146Right-handed alpha
Helix 33
AD6
D
146 166Right-handed alpha
Helix 34
AD7
D
166 175Right-handed alpha
Helix 35
AD8
D
233 256Right-handed alpha
Helix 36
AD9
D
258 287Right-handed alpha
Helix 37
AE1
D
314 346Right-handed alpha
Helix 38
AE2
D
353 360Right-handed alpha
Helix 39
AE3
D
369 383Right-handed alpha
Helix 40
AE4
D
383 391Right-handed alpha
Helix 41
AE5
D
392 394Right-handed 310
Helix 42
AE6
D
395 407Right-handed alpha
Helix 43
AE7
E
22 50Right-handed alpha
Helix 44
AE8
E
102 117Right-handed alpha
Helix 45
AE9
E
119 124Right-handed alpha
Helix 46
AF1
E
124 141Right-handed alpha
Helix 47
AF2
E
141 146Right-handed alpha
Helix 48
AF3
E
259 286Right-handed alpha
Helix 49
AF4
E
287 289Right-handed 310
Helix 50
AF5
E
299 304Right-handed alpha
Helix 51
AF6
E
315 344Right-handed alpha
Helix 52
AF7
F
22 48Right-handed alpha
Helix 53
AF8
F
104 119Right-handed alpha
Helix 54
AF9
F
121 143Right-handed alpha
Helix 55
AG1
F
257 284Right-handed alpha
Helix 56
AG2
F
285 287Right-handed 310
Helix 57
AG3
F
312 344Right-handed alpha
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There are 6 sheets in PDB entry 8DSA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 56first strand
Strand 2
A
308 311anti-parallel
Strand 3
A
292 295anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
53 56first strand
Strand 2
B
308 311anti-parallel
Strand 3
B
292 295anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
53 56first strand
Strand 2
C
307 311anti-parallel
Strand 3
C
292 296anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
53 56first strand
Strand 2
D
307 311anti-parallel
Strand 3
D
292 296anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
292 296first strand
Strand 2
E
307 311anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
52 56first strand
Strand 2
F
306 310anti-parallel
Strand 3
F
290 293anti-parallel
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