Analysis of interatomic Contacts of Structural Units in PDB entry:
8DSF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8DSF entry

There are 4 chains in PDB entry 8DSF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 260ARG 351
B
 ILE 261TYR 352
C
 SER 260TYR 352
D
 SER 260GLY 350
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 8DSF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
263 267Right-handed 310
Helix 2
AA2
A
268 275Right-handed alpha
Helix 3
AA3
A
286 293Right-handed alpha
Helix 4
AA4
A
321 330Right-handed alpha
Helix 5
AA5
A
333 341Right-handed alpha
Helix 6
AA6
A
341 350Right-handed alpha
Helix 7
AA7
B
263 267Right-handed 310
Helix 8
AA8
B
268 276Right-handed alpha
Helix 9
AA9
B
286 293Right-handed alpha
Helix 10
AB1
B
321 330Right-handed alpha
Helix 11
AB2
B
333 341Right-handed alpha
Helix 12
AB3
B
341 351Right-handed alpha
Helix 13
AB4
C
263 267Right-handed 310
Helix 14
AB5
C
268 276Right-handed alpha
Helix 15
AB6
C
277 279Right-handed 310
Helix 16
AB7
C
286 293Right-handed alpha
Helix 17
AB8
C
321 330Right-handed alpha
Helix 18
AB9
C
333 341Right-handed alpha
Helix 19
AC1
C
341 349Right-handed alpha
Helix 20
AC2
D
263 267Right-handed 310
Helix 21
AC3
D
268 276Right-handed alpha
Helix 22
AC4
D
277 279Right-handed 310
Helix 23
AC5
D
286 293Right-handed alpha
Helix 24
AC6
D
321 330Right-handed alpha
Helix 25
AC7
D
333 341Right-handed alpha
Helix 26
AC8
D
341 350Right-handed alpha
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There are 4 sheets in PDB entry 8DSF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
295 297first strand
Strand 2
A
304 306anti-parallel
Strand 3
A
312 313anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
295 297first strand
Strand 2
B
304 306anti-parallel
Strand 3
B
312 313anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
295 297first strand
Strand 2
C
304 306anti-parallel
Strand 3
C
312 313anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
295 297first strand
Strand 2
D
304 306anti-parallel
Strand 3
D
312 313anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il