Analysis of interatomic Contacts of Structural Units in PDB entry:
8DSO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8DSO entry

There are 2 chains in PDB entry 8DSO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 TYR 392SER 659
D
 ILE 261ARG 351
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 8DSO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
392 396Right-handed 310
Helix 2
AA2
B
398 400Right-handed 310
Helix 3
AA3
B
439 451Right-handed alpha
Helix 4
AA4
B
481 489Right-handed alpha
Helix 5
AA5
B
494 515Right-handed alpha
Helix 6
AA6
B
541 545Right-handed 310
Helix 7
AA7
B
558 564Right-handed 310
Helix 8
AA8
B
565 572Right-handed alpha
Helix 9
AA9
B
575 592Right-handed alpha
Helix 10
AB1
B
602 611Right-handed alpha
Helix 11
AB2
B
625 633Right-handed alpha
Helix 12
AB3
B
637 641Right-handed 310
Helix 13
AB4
B
643 657Right-handed alpha
Helix 14
AB5
D
263 267Right-handed 310
Helix 15
AB6
D
268 276Right-handed alpha
Helix 16
AB7
D
286 293Right-handed alpha
Helix 17
AB8
D
321 330Right-handed alpha
Helix 18
AB9
D
335 341Right-handed alpha
Helix 19
AC1
D
341 350Right-handed alpha
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There are 3 sheets in PDB entry 8DSO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
402 411first strand
Strand 2
B
414 421anti-parallel
Strand 3
B
425 432anti-parallel
Strand 4
B
471 475anti-parallel
Strand 5
B
460 464anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
528 529first strand
Strand 2
B
535 536anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
295 297first strand
Strand 2
D
304 306anti-parallel
Strand 3
D
312 313anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il