Analysis of interatomic Contacts of Structural Units in PDB entry:
8DSP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8DSP entry

There are 3 chains in PDB entry 8DSP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 LYS 6GLU 167
E
 VAL 4GLU 167
F
 VAL 4GLU 167
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 8DSP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
28 32Right-handed 310
Helix 2
AA2
C
65 69Right-handed 310
Helix 3
AA3
C
95 120Right-handed alpha
Helix 4
AA4
C
150 156Right-handed alpha
Helix 5
AA5
C
157 165Right-handed alpha
Helix 6
AA6
E
28 30Right-handed 310
Helix 7
AA7
E
65 68Right-handed 310
Helix 8
AA8
E
95 120Right-handed alpha
Helix 9
AA9
E
150 166Right-handed alpha
Helix 10
AB1
F
28 30Right-handed 310
Helix 11
AB2
F
65 68Right-handed 310
Helix 12
AB3
F
95 118Right-handed alpha
Helix 13
AB4
F
151 167Right-handed alpha
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There are 11 sheets in PDB entry 8DSP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
10 12first strand
Strand 2
C
72 74anti-parallel
Strand 3
C
35 37anti-parallel
Strand 4
C
41 43anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
19 21first strand
Strand 2
C
57 59anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
122 123first strand
Strand 2
C
129 130anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
136 138first strand
Strand 2
F
129 130parallel
Strand 3
F
122 123anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
8 9first strand
Strand 2
E
75 77anti-parallel
Strand 3
E
32 38anti-parallel
Strand 4
E
42 43anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
8 9first strand
Strand 2
E
75 77anti-parallel
Strand 3
E
32 38anti-parallel
Strand 4
E
70 72anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
19 21first strand
Strand 2
E
57 60anti-parallel
Strand 3
E
50 54anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
122 123first strand
Strand 2
E
129 130anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
19 21first strand
Strand 2
F
57 59anti-parallel
Strand 3
F
52 54anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
42 43first strand
Strand 2
F
32 38anti-parallel
Strand 3
F
70 72anti-parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
42 43first strand
Strand 2
F
32 38anti-parallel
Strand 3
F
75 77anti-parallel
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