Analysis of interatomic Contacts of Structural Units in PDB entry:
8DSR

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8DSR entry

There are 2 chains in PDB entry 8DSR (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 232	LYS 570
B	LYS 232	LYS 570

There are 15 helices in PDB entry 8DSR. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	291	295	Right-handed 310
Helix 2	AA2	A	354	359	Right-handed alpha
Helix 3	AA3	A	378	387	Right-handed alpha
Helix 4	AA4	A	466	477	Right-handed alpha
Helix 5	AA5	A	486	491	Right-handed alpha
Helix 6	AA6	A	492	494	Right-handed 310
Helix 7	AA7	A	509	513	Right-handed alpha
Helix 8	AA8	B	291	295	Right-handed 310
Helix 9	AA9	B	354	359	Right-handed alpha
Helix 10	AB1	B	378	387	Right-handed alpha
Helix 11	AB2	B	413	415	Right-handed 310
Helix 12	AB3	B	466	477	Right-handed alpha
Helix 13	AB4	B	486	491	Right-handed alpha
Helix 14	AB5	B	492	494	Right-handed 310
Helix 15	AB6	B	509	513	Right-handed alpha

There are 14 sheets in PDB entry 8DSR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	248	250	first strand
Strand 2	A	236	242	anti-parallel
Strand 3	A	406	409	anti-parallel
Strand 4	A	393	397	anti-parallel
Strand 5	A	549	554	anti-parallel
Strand 6	A	563	569	anti-parallel
Strand 7	A	417	425	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	259	261	first strand
Strand 2	A	252	254	anti-parallel
Strand 3	A	314	326	anti-parallel
Strand 4	A	331	344	anti-parallel
Strand 5	A	272	275	parallel
Strand 6	A	362	365	anti-parallel
Strand 7	A	264	266	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	259	261	first strand
Strand 2	A	252	254	anti-parallel
Strand 3	A	314	326	anti-parallel
Strand 4	A	307	311	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	433	436	first strand
Strand 2	A	452	456	anti-parallel
Strand 3	A	537	540	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	444	445	first strand
Strand 2	A	438	441	anti-parallel
Strand 3	A	497	501	anti-parallel
Strand 4	A	504	508	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	463	465	first strand
Strand 2	A	525	527	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	480	481	first strand
Strand 2	A	520	523	anti-parallel
Strand 3	A	514	517	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	248	250	first strand
Strand 2	B	236	242	anti-parallel
Strand 3	B	406	409	anti-parallel
Strand 4	B	393	397	anti-parallel
Strand 5	B	549	554	anti-parallel
Strand 6	B	563	569	anti-parallel
Strand 7	B	417	425	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	259	261	first strand
Strand 2	B	252	254	anti-parallel
Strand 3	B	314	326	anti-parallel
Strand 4	B	299	300	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	264	266	first strand
Strand 2	B	362	365	parallel
Strand 3	B	272	275	anti-parallel
Strand 4	B	331	344	parallel
Strand 5	B	314	326	anti-parallel
Strand 6	B	307	311	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	433	435	first strand
Strand 2	B	453	456	anti-parallel
Strand 3	B	538	540	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	444	445	first strand
Strand 2	B	438	441	anti-parallel
Strand 3	B	497	501	anti-parallel
Strand 4	B	504	508	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	463	465	first strand
Strand 2	B	525	527	parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	480	481	first strand
Strand 2	B	520	523	anti-parallel
Strand 3	B	514	517	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8DSR

Analysis of interatomic Contacts of Structural Units in PDB entry:
8DSR