Analysis of interatomic Contacts of Structural Units in PDB entry:
8DSV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8DSV entry

There are 2 chains in PDB entry 8DSV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 51	SER 482
B	GLY 51	THR 280

There are 38 helices in PDB entry 8DSV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	62	75	Right-handed alpha
Helix 2	AA2	A	113	124	Right-handed alpha
Helix 3	AA3	A	151	167	Right-handed alpha
Helix 4	AA4	A	169	174	Right-handed alpha
Helix 5	AA5	A	183	190	Right-handed alpha
Helix 6	AA6	A	193	199	Right-handed alpha
Helix 7	AA7	A	204	220	Right-handed alpha
Helix 8	AA8	A	222	226	Right-handed 310
Helix 9	AA9	A	227	238	Right-handed alpha
Helix 10	AB1	A	241	248	Right-handed alpha
Helix 11	AB2	A	257	270	Right-handed alpha
Helix 12	AB3	A	309	316	Right-handed 310
Helix 13	AB4	A	323	333	Right-handed alpha
Helix 14	AB5	A	384	388	Right-handed 310
Helix 15	AB6	A	392	404	Right-handed alpha
Helix 16	AB7	A	434	436	Right-handed 310
Helix 17	AB8	A	437	443	Right-handed alpha
Helix 18	AB9	A	452	456	Right-handed 310
Helix 19	AC1	A	462	482	Right-handed alpha
Helix 20	AC2	B	62	75	Right-handed alpha
Helix 21	AC3	B	113	124	Right-handed alpha
Helix 22	AC4	B	151	167	Right-handed alpha
Helix 23	AC5	B	169	174	Right-handed alpha
Helix 24	AC6	B	183	190	Right-handed alpha
Helix 25	AC7	B	193	199	Right-handed alpha
Helix 26	AC8	B	204	220	Right-handed alpha
Helix 27	AC9	B	222	226	Right-handed 310
Helix 28	AD1	B	227	238	Right-handed alpha
Helix 29	AD2	B	241	250	Right-handed alpha
Helix 30	AD3	B	257	270	Right-handed alpha
Helix 31	AD4	B	309	316	Right-handed 310
Helix 32	AD5	B	323	333	Right-handed alpha
Helix 33	AD6	B	384	388	Right-handed 310
Helix 34	AD7	B	392	404	Right-handed alpha
Helix 35	AD8	B	434	436	Right-handed 310
Helix 36	AD9	B	437	443	Right-handed alpha
Helix 37	AE1	B	452	456	Right-handed 310
Helix 38	AE2	B	462	482	Right-handed alpha

There are 10 sheets in PDB entry 8DSV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	272	274	first strand
Strand 2	A	79	82	parallel
Strand 3	A	54	59	parallel
Strand 4	A	298	306	parallel
Strand 5	A	288	293	anti-parallel
Strand 6	A	279	285	anti-parallel
Strand 7	A	317	319	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	272	274	first strand
Strand 2	A	79	82	parallel
Strand 3	A	54	59	parallel
Strand 4	A	298	306	parallel
Strand 5	A	448	450	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	94	97	first strand
Strand 2	A	100	103	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	108	109	first strand
Strand 2	A	252	254	anti-parallel
Strand 3	A	127	129	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	147	150	first strand
Strand 2	A	137	141	anti-parallel
Strand 3	A	352	356	parallel
Strand 4	A	364	371	anti-parallel
Strand 5	A	375	382	anti-parallel
Strand 6	A	339	345	anti-parallel
Strand 7	A	409	415	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	272	274	first strand
Strand 2	B	79	82	parallel
Strand 3	B	54	59	parallel
Strand 4	B	298	306	parallel
Strand 5	B	288	293	anti-parallel
Strand 6	B	279	285	anti-parallel
Strand 7	B	317	319	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	272	274	first strand
Strand 2	B	79	82	parallel
Strand 3	B	54	59	parallel
Strand 4	B	298	306	parallel
Strand 5	B	448	450	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	94	97	first strand
Strand 2	B	100	103	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	108	109	first strand
Strand 2	B	252	254	anti-parallel
Strand 3	B	127	129	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	147	150	first strand
Strand 2	B	137	141	anti-parallel
Strand 3	B	352	356	parallel
Strand 4	B	364	371	anti-parallel
Strand 5	B	375	382	anti-parallel
Strand 6	B	339	345	anti-parallel
Strand 7	B	409	416	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8DSV

Analysis of interatomic Contacts of Structural Units in PDB entry:
8DSV