Analysis of interatomic Contacts of Structural Units in PDB entry:
8DSW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8DSW entry

There is 1 chain in PDB entry 8DSW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 694LEU 1021
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 8DSW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
708 710Right-handed 310
Helix 2
AA2
A
752 773Right-handed alpha
Helix 3
AA3
A
801 809Right-handed alpha
Helix 4
AA4
A
810 813Right-handed 310
Helix 5
AA5
A
814 835Right-handed alpha
Helix 6
AA6
A
843 845Right-handed 310
Helix 7
AA7
A
881 885Right-handed 310
Helix 8
AA8
A
886 893Right-handed alpha
Helix 9
AA9
A
896 913Right-handed alpha
Helix 10
AB1
A
923 933Right-handed alpha
Helix 11
AB2
A
944 954Right-handed alpha
Helix 12
AB3
A
958 962Right-handed 310
Helix 13
AB4
A
964 977Right-handed alpha
Helix 14
AB5
A
978 982Right-handed 310
Helix 15
AB6
A
987 991Right-handed 310
Helix 16
AB7
A
1016 1021Right-handed alpha
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There are 3 sheets in PDB entry 8DSW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
712 719first strand
Strand 2
A
725 731anti-parallel
Strand 3
A
740 746anti-parallel
Strand 4
A
791 795anti-parallel
Strand 5
A
781 785anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
837 838first strand
Strand 2
A
864 865anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
847 851first strand
Strand 2
A
854 857anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il