Analysis of interatomic Contacts of Structural Units in PDB entry:
8DSY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8DSY entry

There are 2 chains in PDB entry 8DSY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 236LYS 502
B
 GLU 235TYR 505
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 8DSY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
236 254Right-handed alpha
Helix 2
AA2
A
257 267Right-handed alpha
Helix 3
AA3
A
279 290Right-handed alpha
Helix 4
AA4
A
304 330Right-handed alpha
Helix 5
AA5
A
333 337Right-handed 310
Helix 6
AA6
A
338 361Right-handed alpha
Helix 7
AA7
A
370 372Right-handed 310
Helix 8
AA8
A
378 382Right-handed alpha
Helix 9
AA9
A
387 391Right-handed 310
Helix 10
AB1
A
392 404Right-handed alpha
Helix 11
AB2
A
408 421Right-handed alpha
Helix 12
AB3
A
430 453Right-handed alpha
Helix 13
AB4
A
458 465Right-handed alpha
Helix 14
AB5
A
466 488Right-handed alpha
Helix 15
AB6
A
494 499Right-handed alpha
Helix 16
AB7
B
236 254Right-handed alpha
Helix 17
AB8
B
257 267Right-handed alpha
Helix 18
AB9
B
279 291Right-handed alpha
Helix 19
AC1
B
304 330Right-handed alpha
Helix 20
AC2
B
333 337Right-handed 310
Helix 21
AC3
B
338 360Right-handed alpha
Helix 22
AC4
B
370 372Right-handed 310
Helix 23
AC5
B
378 383Right-handed alpha
Helix 24
AC6
B
392 404Right-handed alpha
Helix 25
AC7
B
408 421Right-handed alpha
Helix 26
AC8
B
430 453Right-handed alpha
Helix 27
AC9
B
458 486Right-handed alpha
Helix 28
AD1
B
495 501Right-handed alpha
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There are 2 sheets in PDB entry 8DSY. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
275 277first strand
Strand 2
A
374 377parallel
Strand 3
A
366 369anti-parallel
Strand 4
A
362 363anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
275 277first strand
Strand 2
B
374 377parallel
Strand 3
B
366 369anti-parallel
Strand 4
B
362 363anti-parallel
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