Analysis of interatomic Contacts of Structural Units in PDB entry:
8DTB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8DTB entry

There are 5 chains in PDB entry 8DTB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	GLY 1	ARG 33
G	PRO 4208	PHE 4968
A	PRO 4208	ASP 4969
D	PRO 4208	ASP 4969
J	PRO 4208	ASP 4969

There are 90 helices in PDB entry 8DTB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	G	4209	4225	Right-handed alpha
Helix 2	AA2	G	4229	4252	Right-handed alpha
Helix 3	AA3	G	4324	4342	Right-handed alpha
Helix 4	AA4	G	4542	4558	Right-handed alpha
Helix 5	AA5	G	4558	4578	Right-handed alpha
Helix 6	AA6	G	4639	4665	Right-handed alpha
Helix 7	AA7	G	4665	4683	Right-handed alpha
Helix 8	AA8	G	4685	4690	Right-handed alpha
Helix 9	AA9	G	4696	4702	Right-handed alpha
Helix 10	AB1	G	4703	4706	Right-handed 310
Helix 11	AB2	G	4719	4728	Right-handed alpha
Helix 12	AB3	G	4733	4742	Right-handed alpha
Helix 13	AB4	G	4767	4771	Right-handed alpha
Helix 14	AB5	G	4772	4786	Right-handed alpha
Helix 15	AB6	G	4786	4806	Right-handed alpha
Helix 16	AB7	G	4807	4813	Right-handed 310
Helix 17	AB8	G	4814	4820	Right-handed alpha
Helix 18	AB9	G	4820	4833	Right-handed alpha
Helix 19	AC1	G	4833	4858	Right-handed alpha
Helix 20	AC2	G	4878	4889	Right-handed alpha
Helix 21	AC3	G	4889	4894	Right-handed alpha
Helix 22	AC4	G	4909	4926	Right-handed alpha
Helix 23	AC5	G	4927	4956	Right-handed alpha
Helix 24	AC6	A	4209	4224	Right-handed alpha
Helix 25	AC7	A	4229	4251	Right-handed alpha
Helix 26	AC8	A	4324	4342	Right-handed alpha
Helix 27	AC9	A	4552	4558	Right-handed alpha
Helix 28	AD1	A	4558	4577	Right-handed alpha
Helix 29	AD2	A	4638	4665	Right-handed alpha
Helix 30	AD3	A	4665	4684	Right-handed alpha
Helix 31	AD4	A	4696	4702	Right-handed alpha
Helix 32	AD5	A	4702	4707	Right-handed alpha
Helix 33	AD6	A	4720	4728	Right-handed alpha
Helix 34	AD7	A	4733	4741	Right-handed alpha
Helix 35	AD8	A	4772	4786	Right-handed alpha
Helix 36	AD9	A	4786	4805	Right-handed alpha
Helix 37	AE1	A	4806	4813	Right-handed 310
Helix 38	AE2	A	4814	4820	Right-handed alpha
Helix 39	AE3	A	4820	4833	Right-handed alpha
Helix 40	AE4	A	4833	4858	Right-handed alpha
Helix 41	AE5	A	4878	4894	Right-handed alpha
Helix 42	AE6	A	4896	4900	Right-handed 310
Helix 43	AE7	A	4909	4925	Right-handed alpha
Helix 44	AE8	A	4927	4957	Right-handed alpha
Helix 45	AE9	A	4964	4969	Right-handed alpha
Helix 46	AF1	D	4209	4224	Right-handed alpha
Helix 47	AF2	D	4229	4252	Right-handed alpha
Helix 48	AF3	D	4324	4341	Right-handed alpha
Helix 49	AF4	D	4542	4558	Right-handed alpha
Helix 50	AF5	D	4558	4578	Right-handed alpha
Helix 51	AF6	D	4636	4638	Right-handed 310
Helix 52	AF7	D	4639	4665	Right-handed alpha
Helix 53	AF8	D	4665	4684	Right-handed alpha
Helix 54	AF9	D	4696	4702	Right-handed alpha
Helix 55	AG1	D	4703	4706	Right-handed 310
Helix 56	AG2	D	4719	4728	Right-handed alpha
Helix 57	AG3	D	4733	4742	Right-handed alpha
Helix 58	AG4	D	4773	4786	Right-handed alpha
Helix 59	AG5	D	4786	4805	Right-handed alpha
Helix 60	AG6	D	4806	4813	Right-handed 310
Helix 61	AG7	D	4814	4820	Right-handed alpha
Helix 62	AG8	D	4820	4833	Right-handed alpha
Helix 63	AG9	D	4833	4858	Right-handed alpha
Helix 64	AH1	D	4878	4889	Right-handed alpha
Helix 65	AH2	D	4889	4894	Right-handed alpha
Helix 66	AH3	D	4909	4925	Right-handed alpha
Helix 67	AH4	D	4927	4956	Right-handed alpha
Helix 68	AH5	D	4964	4969	Right-handed alpha
Helix 69	AH6	J	4209	4224	Right-handed alpha
Helix 70	AH7	J	4229	4252	Right-handed alpha
Helix 71	AH8	J	4324	4341	Right-handed alpha
Helix 72	AH9	J	4542	4558	Right-handed alpha
Helix 73	AI1	J	4559	4578	Right-handed alpha
Helix 74	AI2	J	4638	4665	Right-handed alpha
Helix 75	AI3	J	4665	4684	Right-handed alpha
Helix 76	AI4	J	4697	4703	Right-handed alpha
Helix 77	AI5	J	4704	4708	Right-handed 310
Helix 78	AI6	J	4719	4728	Right-handed alpha
Helix 79	AI7	J	4733	4742	Right-handed alpha
Helix 80	AI8	J	4772	4786	Right-handed alpha
Helix 81	AI9	J	4786	4805	Right-handed alpha
Helix 82	AJ1	J	4806	4813	Right-handed 310
Helix 83	AJ2	J	4814	4820	Right-handed alpha
Helix 84	AJ3	J	4820	4833	Right-handed alpha
Helix 85	AJ4	J	4833	4858	Right-handed alpha
Helix 86	AJ5	J	4878	4894	Right-handed alpha
Helix 87	AJ6	J	4896	4900	Right-handed 310
Helix 88	AJ7	J	4909	4925	Right-handed alpha
Helix 89	AJ8	J	4927	4957	Right-handed alpha
Helix 90	AJ9	J	4964	4969	Right-handed alpha

There are 4 sheets in PDB entry 8DTB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	4580	4583	first strand
Strand 2	G	4628	4631	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4580	4583	first strand
Strand 2	A	4628	4631	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4580	4583	first strand
Strand 2	D	4628	4631	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	4580	4583	first strand
Strand 2	J	4628	4631	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8DTB

Analysis of interatomic Contacts of Structural Units in PDB entry:
8DTB