Analysis of interatomic Contacts of Structural Units in PDB entry:
8DTC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8DTC entry

There are 2 chains in PDB entry 8DTC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 12ASP 385
B
 LEU 12ASP 385
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 8DTC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 18Right-handed 310
Helix 2
AA2
A
19 31Right-handed alpha
Helix 3
AA3
A
32 34Right-handed 310
Helix 4
AA4
A
70 90Right-handed alpha
Helix 5
AA5
A
145 159Right-handed alpha
Helix 6
AA6
A
161 164Right-handed 310
Helix 7
AA7
A
202 206Right-handed 310
Helix 8
AA8
A
215 219Right-handed 310
Helix 9
AA9
A
226 246Right-handed alpha
Helix 10
AB1
A
252 257Right-handed alpha
Helix 11
AB2
A
258 270Right-handed alpha
Helix 12
AB3
A
281 291Right-handed alpha
Helix 13
AB4
A
296 321Right-handed alpha
Helix 14
AB5
A
329 342Right-handed alpha
Helix 15
AB6
A
342 351Right-handed alpha
Helix 16
AB7
A
355 359Right-handed 310
Helix 17
AB8
A
372 385Right-handed alpha
Helix 18
AB9
B
19 31Right-handed alpha
Helix 19
AC1
B
32 34Right-handed 310
Helix 20
AC2
B
70 87Right-handed alpha
Helix 21
AC3
B
145 159Right-handed alpha
Helix 22
AC4
B
161 164Right-handed 310
Helix 23
AC5
B
202 206Right-handed 310
Helix 24
AC6
B
215 219Right-handed 310
Helix 25
AC7
B
226 246Right-handed alpha
Helix 26
AC8
B
252 256Right-handed 310
Helix 27
AC9
B
258 270Right-handed alpha
Helix 28
AD1
B
281 291Right-handed alpha
Helix 29
AD2
B
295 320Right-handed alpha
Helix 30
AD3
B
329 342Right-handed alpha
Helix 31
AD4
B
342 351Right-handed alpha
Helix 32
AD5
B
355 359Right-handed 310
Helix 33
AD6
B
372 384Right-handed alpha
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There are 6 sheets in PDB entry 8DTC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 67first strand
Strand 2
A
46 52anti-parallel
Strand 3
A
37 42anti-parallel
Strand 4
A
95 100parallel
Strand 5
A
140 144parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
102 104first strand
Strand 2
A
110 113anti-parallel
Strand 3
A
124 126anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
166 170first strand
Strand 2
A
363 367anti-parallel
Strand 3
A
324 327parallel
Strand 4
A
183 188parallel
Strand 5
A
192 198anti-parallel
Strand 6
A
210 213anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
61 67first strand
Strand 2
B
46 52anti-parallel
Strand 3
B
37 42anti-parallel
Strand 4
B
95 100parallel
Strand 5
B
140 144parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
102 104first strand
Strand 2
B
110 113anti-parallel
Strand 3
B
124 126anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
166 170first strand
Strand 2
B
363 367anti-parallel
Strand 3
B
324 327parallel
Strand 4
B
183 188parallel
Strand 5
B
192 198anti-parallel
Strand 6
B
210 213anti-parallel
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