Analysis of interatomic Contacts of Structural Units in PDB entry:
8DTH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8DTH entry

There are 2 chains in PDB entry 8DTH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 111LYS 846
B
 PRO 146LYS 846
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 75 helices in PDB entry 8DTH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
111 124Right-handed alpha
Helix 2
AA2
A
126 141Right-handed alpha
Helix 3
AA3
A
144 165Right-handed alpha
Helix 4
AA4
A
167 182Right-handed alpha
Helix 5
AA5
A
185 199Right-handed alpha
Helix 6
AA6
A
201 216Right-handed alpha
Helix 7
AA7
A
219 233Right-handed alpha
Helix 8
AA8
A
235 250Right-handed alpha
Helix 9
AA9
A
253 274Right-handed alpha
Helix 10
AB1
A
276 291Right-handed alpha
Helix 11
AB2
A
294 308Right-handed alpha
Helix 12
AB3
A
310 325Right-handed alpha
Helix 13
AB4
A
328 342Right-handed alpha
Helix 14
AB5
A
344 359Right-handed alpha
Helix 15
AB6
A
362 377Right-handed alpha
Helix 16
AB7
A
378 393Right-handed alpha
Helix 17
AB8
A
396 410Right-handed alpha
Helix 18
AB9
A
412 427Right-handed alpha
Helix 19
AC1
A
430 442Right-handed alpha
Helix 20
AC2
A
450 466Right-handed alpha
Helix 21
AC3
A
497 508Right-handed alpha
Helix 22
AC4
A
525 538Right-handed alpha
Helix 23
AC5
A
549 560Right-handed alpha
Helix 24
AC6
A
576 582Right-handed alpha
Helix 25
AC7
A
647 653Right-handed alpha
Helix 26
AC8
A
667 681Right-handed alpha
Helix 27
AC9
A
691 694Right-handed 310
Helix 28
AD1
A
695 709Right-handed alpha
Helix 29
AD2
A
712 714Right-handed 310
Helix 30
AD3
A
724 731Right-handed alpha
Helix 31
AD4
A
732 735Right-handed 310
Helix 32
AD5
A
747 756Right-handed alpha
Helix 33
AD6
A
767 781Right-handed alpha
Helix 34
AD7
A
782 784Right-handed 310
Helix 35
AD8
A
789 803Right-handed alpha
Helix 36
AD9
A
804 820Right-handed alpha
Helix 37
AE1
A
821 824Right-handed 310
Helix 38
AE2
A
825 846Right-handed alpha
Helix 39
AE3
B
147 165Right-handed alpha
Helix 40
AE4
B
167 182Right-handed alpha
Helix 41
AE5
B
185 199Right-handed alpha
Helix 42
AE6
B
201 216Right-handed alpha
Helix 43
AE7
B
219 234Right-handed alpha
Helix 44
AE8
B
236 250Right-handed alpha
Helix 45
AE9
B
253 275Right-handed alpha
Helix 46
AF1
B
276 291Right-handed alpha
Helix 47
AF2
B
294 309Right-handed alpha
Helix 48
AF3
B
310 325Right-handed alpha
Helix 49
AF4
B
328 341Right-handed alpha
Helix 50
AF5
B
344 359Right-handed alpha
Helix 51
AF6
B
362 377Right-handed alpha
Helix 52
AF7
B
378 393Right-handed alpha
Helix 53
AF8
B
396 410Right-handed alpha
Helix 54
AF9
B
412 427Right-handed alpha
Helix 55
AG1
B
430 444Right-handed alpha
Helix 56
AG2
B
450 466Right-handed alpha
Helix 57
AG3
B
497 507Right-handed alpha
Helix 58
AG4
B
525 537Right-handed alpha
Helix 59
AG5
B
549 560Right-handed alpha
Helix 60
AG6
B
576 582Right-handed alpha
Helix 61
AG7
B
647 653Right-handed alpha
Helix 62
AG8
B
662 666Right-handed 310
Helix 63
AG9
B
667 681Right-handed alpha
Helix 64
AH1
B
691 694Right-handed 310
Helix 65
AH2
B
695 710Right-handed alpha
Helix 66
AH3
B
712 714Right-handed 310
Helix 67
AH4
B
724 731Right-handed alpha
Helix 68
AH5
B
732 735Right-handed 310
Helix 69
AH6
B
747 756Right-handed alpha
Helix 70
AH7
B
767 781Right-handed alpha
Helix 71
AH8
B
782 784Right-handed 310
Helix 72
AH9
B
789 803Right-handed alpha
Helix 73
AI1
B
803 820Right-handed alpha
Helix 74
AI2
B
821 824Right-handed 310
Helix 75
AI3
B
825 846Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 8DTH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
541 544first strand
Strand 2
A
513 519parallel
Strand 3
A
483 489parallel
Strand 4
A
564 567parallel
Strand 5
A
587 590parallel
Strand 6
A
605 609parallel
Strand 7
A
624 628parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
716 719first strand
Strand 2
A
685 689parallel
Strand 3
A
656 659parallel
Strand 4
A
737 739parallel
Strand 5
A
760 763parallel
Strand 6
A
786 787parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
541 544first strand
Strand 2
B
513 519parallel
Strand 3
B
483 489parallel
Strand 4
B
564 567parallel
Strand 5
B
587 590parallel
Strand 6
B
605 609parallel
Strand 7
B
624 628parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
716 719first strand
Strand 2
B
684 689parallel
Strand 3
B
655 659parallel
Strand 4
B
737 739parallel
Strand 5
B
760 763parallel
Strand 6
B
786 787parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il