Analysis of interatomic Contacts of Structural Units in PDB entry:
8DTM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8DTM entry

There are 3 chains in PDB entry 8DTM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	HIS 1	ASP 464
B	GLN 465	TYR 910
C	SER 1	CYS 18

There are 12 helices in PDB entry 8DTM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	18	24	Right-handed 310
Helix 2	AA2	A	221	225	Right-handed 310
Helix 3	AA3	A	255	265	Right-handed alpha
Helix 4	AA4	A	314	318	Right-handed 310
Helix 5	AA5	A	323	329	Right-handed alpha
Helix 6	AA6	A	352	359	Right-handed alpha
Helix 7	AA7	A	435	447	Right-handed alpha
Helix 8	AA8	B	496	500	Right-handed 310
Helix 9	AA9	B	642	646	Right-handed 310
Helix 10	AB1	B	697	711	Right-handed alpha
Helix 11	AB2	B	865	872	Right-handed alpha
Helix 12	AB3	C	2	13	Right-handed alpha

There are 15 sheets in PDB entry 8DTM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	7	14	first strand
Strand 2	A	28	38	parallel
Strand 3	A	56	57	parallel
Strand 4	A	81	82	parallel
Strand 5	A	111	112	parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	7	14	first strand
Strand 2	A	28	38	parallel
Strand 3	A	61	66	parallel
Strand 4	A	93	96	parallel
Strand 5	A	117	120	parallel
Strand 6	A	144	146	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	231	233	first strand
Strand 2	A	236	238	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	246	248	first strand
Strand 2	A	252	254	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	278	279	first strand
Strand 2	A	284	285	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	292	294	first strand
Strand 2	A	301	303	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	311	312	first strand
Strand 2	A	335	336	parallel
Strand 3	A	363	364	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	320	321	first strand
Strand 2	A	340	342	parallel
Strand 3	A	368	371	parallel
Strand 4	A	398	403	parallel
Strand 5	A	425	429	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	471	473	first strand
Strand 2	B	583	585	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	475	480	first strand
Strand 2	B	485	489	anti-parallel
Strand 3	B	552	555	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	532	534	first strand
Strand 2	B	502	509	anti-parallel
Strand 3	B	563	571	anti-parallel
Strand 4	B	588	591	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	601	606	first strand
Strand 2	B	613	618	anti-parallel
Strand 3	B	769	772	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	761	765	first strand
Strand 2	B	629	637	anti-parallel
Strand 3	B	780	788	anti-parallel
Strand 4	B	801	806	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	821	824	first strand
Strand 2	B	829	833	anti-parallel
Strand 3	B	874	877	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	859	864	first strand
Strand 2	B	844	853	anti-parallel
Strand 3	B	883	892	anti-parallel
Strand 4	B	903	906	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8DTM

Analysis of interatomic Contacts of Structural Units in PDB entry:
8DTM