Analysis of interatomic Contacts of Structural Units in PDB entry:
8DTO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8DTO entry

There are 12 chains in PDB entry 8DTO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
E	ASN 33	VAL 504
F	PHE 522	ASP 664
G	GLN 1	THR 126
H	THR 5	LEU 110
A	ASN 33	VAL 504
B	PHE 522	ASP 664
C	GLN 1	THR 126
D	THR 5	LEU 110
I	ASN 33	VAL 504
J	PHE 522	ASP 664
K	GLN 1	THR 126
L	THR 5	LEU 110

There are 38 helices in PDB entry 8DTO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	E	70	74	Right-handed 310
Helix 2	AA2	E	99	117	Right-handed alpha
Helix 3	AA3	E	195	198	Right-handed 310
Helix 4	AA4	E	335	351	Right-handed alpha
Helix 5	AA5	E	426	429	Right-handed 310
Helix 6	AA6	E	474	480	Right-handed alpha
Helix 7	AA7	F	570	596	Right-handed alpha
Helix 8	AA8	F	618	625	Right-handed alpha
Helix 9	AA9	F	627	635	Right-handed alpha
Helix 10	AB1	F	638	663	Right-handed alpha
Helix 11	AB2	G	87	91	Right-handed 310
Helix 12	AB3	H	81	85	Right-handed 310
Helix 13	AB4	A	70	74	Right-handed 310
Helix 14	AB5	A	96	98	Right-handed 310
Helix 15	AB6	A	99	117	Right-handed alpha
Helix 16	AB7	A	335	351	Right-handed alpha
Helix 17	AB8	A	368	373	Right-handed alpha
Helix 18	AB9	A	425	429	Right-handed 310
Helix 19	AC1	A	474	480	Right-handed alpha
Helix 20	AC2	B	530	534	Right-handed 310
Helix 21	AC3	B	570	597	Right-handed alpha
Helix 22	AC4	B	618	626	Right-handed alpha
Helix 23	AC5	B	627	636	Right-handed alpha
Helix 24	AC6	B	638	663	Right-handed alpha
Helix 25	AC7	C	87	91	Right-handed 310
Helix 26	AC8	I	70	74	Right-handed 310
Helix 27	AC9	I	99	117	Right-handed alpha
Helix 28	AD1	I	335	351	Right-handed alpha
Helix 29	AD2	I	368	373	Right-handed alpha
Helix 30	AD3	I	425	429	Right-handed 310
Helix 31	AD4	I	475	480	Right-handed alpha
Helix 32	AD5	J	537	543	Right-handed alpha
Helix 33	AD6	J	570	596	Right-handed alpha
Helix 34	AD7	J	618	625	Right-handed alpha
Helix 35	AD8	J	627	636	Right-handed alpha
Helix 36	AD9	J	638	663	Right-handed alpha
Helix 37	AE1	K	87	91	Right-handed 310
Helix 38	AE2	L	81	85	Right-handed 310

There are 45 sheets in PDB entry 8DTO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	36	40	first strand
Strand 2	E	493	497	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	45	47	first strand
Strand 2	E	485	490	anti-parallel
Strand 3	E	223	228	anti-parallel
Strand 4	E	242	245	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	75	76	first strand
Strand 2	E	53	56	parallel
Strand 3	E	216	218	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	91	94	first strand
Strand 2	E	236	239	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	167	175	first strand
Strand 2	E	152	160	anti-parallel
Strand 3	E	129	133	anti-parallel
Strand 4	E	190	193	anti-parallel
Strand 5	E	179	181	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	202	203	first strand
Strand 2	E	432	434	parallel
Strand 3	E	422	424	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	259	261	first strand
Strand 2	E	442	456	anti-parallel
Strand 3	E	284	298	anti-parallel
Strand 4	E	330	334	anti-parallel
Strand 5	E	412	420	anti-parallel
Strand 6	E	381	385	anti-parallel
Strand 7	E	374	378	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	271	273	first strand
Strand 2	E	284	298	anti-parallel
Strand 3	E	442	456	anti-parallel
Strand 4	E	464	469	anti-parallel
Strand 5	E	357	361	parallel
Strand 6	E	393	395	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	305	308	first strand
Strand 2	E	316	319	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	3	6	first strand
Strand 2	G	17	25	anti-parallel
Strand 3	G	78	84	anti-parallel
Strand 4	G	68	73	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	10	12	first strand
Strand 2	G	121	125	parallel
Strand 3	G	92	101	anti-parallel
Strand 4	G	32	39	anti-parallel
Strand 5	G	45	51	anti-parallel
Strand 6	G	58	60	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	10	12	first strand
Strand 2	G	121	125	parallel
Strand 3	G	92	101	anti-parallel
Strand 4	G	116	117	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	9	12	first strand
Strand 2	H	105	109	parallel
Strand 3	H	87	93	anti-parallel
Strand 4	H	35	40	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	9	12	first strand
Strand 2	H	105	109	parallel
Strand 3	H	87	93	anti-parallel
Strand 4	H	99	101	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	18	23	first strand
Strand 2	H	72	77	anti-parallel
Strand 3	H	64	69	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	36	40	first strand
Strand 2	A	493	497	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	45	47	first strand
Strand 2	A	485	490	anti-parallel
Strand 3	A	223	228	anti-parallel
Strand 4	A	242	245	anti-parallel
Strand 5	A	84	85	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	75	76	first strand
Strand 2	A	53	56	parallel
Strand 3	A	216	218	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	91	94	first strand
Strand 2	A	236	239	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	167	175	first strand
Strand 2	A	152	160	anti-parallel
Strand 3	A	129	131	anti-parallel
Strand 4	A	190	193	anti-parallel
Strand 5	A	179	181	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	202	203	first strand
Strand 2	A	433	434	parallel
Strand 3	A	422	423	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	259	261	first strand
Strand 2	A	448	455	anti-parallel
Strand 3	A	284	287	anti-parallel
Strand 4	A	271	273	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	259	261	first strand
Strand 2	A	448	455	anti-parallel
Strand 3	A	464	469	anti-parallel
Strand 4	A	357	361	parallel
Strand 5	A	393	395	anti-parallel

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There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	374	375	first strand
Strand 2	A	382	385	anti-parallel
Strand 3	A	412	420	anti-parallel
Strand 4	A	330	334	anti-parallel
Strand 5	A	294	298	anti-parallel
Strand 6	A	442	446	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	301	302	first strand
Strand 2	A	322	323	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	305	308	first strand
Strand 2	A	316	319	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	6	first strand
Strand 2	C	17	25	anti-parallel
Strand 3	C	78	84	anti-parallel
Strand 4	C	68	73	anti-parallel

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There are 6 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	12	first strand
Strand 2	C	121	125	parallel
Strand 3	C	92	101	anti-parallel
Strand 4	C	32	39	anti-parallel
Strand 5	C	45	51	anti-parallel
Strand 6	C	58	60	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	9	12	first strand
Strand 2	D	105	109	parallel
Strand 3	D	87	94	anti-parallel
Strand 4	D	35	40	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	9	12	first strand
Strand 2	D	105	109	parallel
Strand 3	D	87	94	anti-parallel
Strand 4	D	98	101	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	18	23	first strand
Strand 2	D	72	77	anti-parallel
Strand 3	D	64	69	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	36	40	first strand
Strand 2	I	493	497	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	45	47	first strand
Strand 2	I	485	490	anti-parallel
Strand 3	I	223	228	anti-parallel
Strand 4	I	242	245	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	75	76	first strand
Strand 2	I	53	56	parallel
Strand 3	I	216	218	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	91	93	first strand
Strand 2	I	237	239	anti-parallel

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There are 5 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	167	175	first strand
Strand 2	I	152	160	anti-parallel
Strand 3	I	129	133	anti-parallel
Strand 4	I	190	193	anti-parallel
Strand 5	I	179	181	anti-parallel

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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	202	203	first strand
Strand 2	I	433	434	parallel
Strand 3	I	422	423	anti-parallel

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There are 7 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	259	261	first strand
Strand 2	I	442	456	anti-parallel
Strand 3	I	284	298	anti-parallel
Strand 4	I	330	334	anti-parallel
Strand 5	I	412	419	anti-parallel
Strand 6	I	381	385	anti-parallel
Strand 7	I	374	378	anti-parallel

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There are 6 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	271	273	first strand
Strand 2	I	284	298	anti-parallel
Strand 3	I	442	456	anti-parallel
Strand 4	I	464	469	anti-parallel
Strand 5	I	357	361	parallel
Strand 6	I	393	395	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	305	309	first strand
Strand 2	I	315	319	anti-parallel

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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	3	6	first strand
Strand 2	K	17	25	anti-parallel
Strand 3	K	78	84	anti-parallel
Strand 4	K	68	73	anti-parallel

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There are 6 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	10	12	first strand
Strand 2	K	121	125	parallel
Strand 3	K	92	101	anti-parallel
Strand 4	K	32	39	anti-parallel
Strand 5	K	45	51	anti-parallel
Strand 6	K	58	60	anti-parallel

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There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	9	12	first strand
Strand 2	L	105	109	parallel
Strand 3	L	87	93	anti-parallel
Strand 4	L	35	40	anti-parallel

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There are 4 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	9	12	first strand
Strand 2	L	105	109	parallel
Strand 3	L	87	93	anti-parallel
Strand 4	L	99	101	anti-parallel

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There are 3 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	18	23	first strand
Strand 2	L	72	77	anti-parallel
Strand 3	L	64	69	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8DTO

Analysis of interatomic Contacts of Structural Units in PDB entry:
8DTO