Analysis of interatomic Contacts of Structural Units in PDB entry:
8DTR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8DTR entry

There are 6 chains in PDB entry 8DTR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 2LYS 219
B
 GLU 1GLU 216
G
 LEU 1145HIS 1159
E
 GLN 1PRO 218
F
 GLU 1GLU 216
J
 LEU 1145HIS 1159
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 8DTR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
62 65Right-handed 310
Helix 2
AA2
A
87 91Right-handed 310
Helix 3
AA3
A
161 163Right-handed 310
Helix 4
AA4
A
192 196Right-handed 310
Helix 5
AA5
A
206 209Right-handed 310
Helix 6
AA6
B
30 32Right-handed 310
Helix 7
AA7
B
80 84Right-handed 310
Helix 8
AA8
B
124 130Right-handed alpha
Helix 9
AA9
B
186 191Right-handed alpha
Helix 10
AB1
G
1147 1158Right-handed alpha
Helix 11
AB2
E
62 65Right-handed 310
Helix 12
AB3
E
87 91Right-handed 310
Helix 13
AB4
E
161 163Right-handed 310
Helix 14
AB5
E
192 196Right-handed 310
Helix 15
AB6
E
206 209Right-handed 310
Helix 16
AB7
F
30 32Right-handed 310
Helix 17
AB8
F
80 84Right-handed 310
Helix 18
AB9
F
124 131Right-handed alpha
Helix 19
AC1
F
186 191Right-handed alpha
Helix 20
AC2
J
1147 1158Right-handed alpha
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There are 22 sheets in PDB entry 8DTR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 6first strand
Strand 2
A
18 24anti-parallel
Strand 3
A
79 83anti-parallel
Strand 4
A
68 71anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 12first strand
Strand 2
A
112 116parallel
Strand 3
A
92 99anti-parallel
Strand 4
A
34 39anti-parallel
Strand 5
A
45 51anti-parallel
Strand 6
A
58 60anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 12first strand
Strand 2
A
112 116parallel
Strand 3
A
92 99anti-parallel
Strand 4
A
105 108anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
125 129first strand
Strand 2
A
140 150anti-parallel
Strand 3
A
181 190anti-parallel
Strand 4
A
168 170anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
125 129first strand
Strand 2
A
140 150anti-parallel
Strand 3
A
181 190anti-parallel
Strand 4
A
174 175anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
156 159first strand
Strand 2
A
199 205anti-parallel
Strand 3
A
210 216anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 7first strand
Strand 2
B
19 29anti-parallel
Strand 3
B
63 76anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 13first strand
Strand 2
B
105 109parallel
Strand 3
B
85 93anti-parallel
Strand 4
B
34 39anti-parallel
Strand 5
B
46 50anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 13first strand
Strand 2
B
105 109parallel
Strand 3
B
85 93anti-parallel
Strand 4
B
98 101anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
117 121first strand
Strand 2
B
132 142anti-parallel
Strand 3
B
176 185anti-parallel
Strand 4
B
162 166anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
156 157first strand
Strand 2
B
148 153anti-parallel
Strand 3
B
194 200anti-parallel
Strand 4
B
208 213anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
2 6first strand
Strand 2
E
18 26anti-parallel
Strand 3
E
79 83anti-parallel
Strand 4
E
68 72anti-parallel
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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
10 12first strand
Strand 2
E
112 116parallel
Strand 3
E
92 99anti-parallel
Strand 4
E
34 39anti-parallel
Strand 5
E
45 51anti-parallel
Strand 6
E
58 60anti-parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
10 12first strand
Strand 2
E
112 116parallel
Strand 3
E
92 99anti-parallel
Strand 4
E
105 108anti-parallel
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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
125 129first strand
Strand 2
E
140 150anti-parallel
Strand 3
E
181 190anti-parallel
Strand 4
E
168 170anti-parallel
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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
125 129first strand
Strand 2
E
140 150anti-parallel
Strand 3
E
181 190anti-parallel
Strand 4
E
174 175anti-parallel
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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
156 159first strand
Strand 2
E
200 205anti-parallel
Strand 3
E
210 215anti-parallel
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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
4 7first strand
Strand 2
F
19 29anti-parallel
Strand 3
F
63 76anti-parallel
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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
10 13first strand
Strand 2
F
105 109parallel
Strand 3
F
86 93anti-parallel
Strand 4
F
34 39anti-parallel
Strand 5
F
46 50anti-parallel
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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
10 13first strand
Strand 2
F
105 109parallel
Strand 3
F
86 93anti-parallel
Strand 4
F
98 101anti-parallel
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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
117 121first strand
Strand 2
F
132 142anti-parallel
Strand 3
F
176 185anti-parallel
Strand 4
F
162 166anti-parallel
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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
156 157first strand
Strand 2
F
148 153anti-parallel
Strand 3
F
194 200anti-parallel
Strand 4
F
208 213anti-parallel
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