Analysis of interatomic Contacts of Structural Units in PDB entry:
8DTT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8DTT entry

There are 6 chains in PDB entry 8DTT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 1LYS 216
B
 GLU 1GLU 216
G
 PHE 1148THR 1160
E
 LEU 2PRO 215
F
 PHE 2GLU 216
J
 PHE 1148LYS 1157
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 8DTT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
62 65Right-handed 310
Helix 2
AA2
A
74 76Right-handed 310
Helix 3
AA3
A
87 91Right-handed 310
Helix 4
AA4
A
158 160Right-handed 310
Helix 5
AA5
A
189 193Right-handed 310
Helix 6
AA6
A
203 206Right-handed 310
Helix 7
AA7
B
29 32Right-handed 310
Helix 8
AA8
B
80 84Right-handed 310
Helix 9
AA9
B
124 130Right-handed alpha
Helix 10
AB1
B
186 190Right-handed alpha
Helix 11
AB2
G
1149 1156Right-handed alpha
Helix 12
AB3
E
62 65Right-handed 310
Helix 13
AB4
E
87 91Right-handed 310
Helix 14
AB5
E
158 160Right-handed 310
Helix 15
AB6
E
187 193Right-handed 310
Helix 16
AB7
E
203 206Right-handed 310
Helix 17
AB8
F
29 32Right-handed 310
Helix 18
AB9
F
80 84Right-handed 310
Helix 19
AC1
F
124 129Right-handed alpha
Helix 20
AC2
F
186 191Right-handed alpha
Helix 21
AC3
J
1149 1156Right-handed alpha
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There are 22 sheets in PDB entry 8DTT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 6first strand
Strand 2
A
18 26anti-parallel
Strand 3
A
78 83anti-parallel
Strand 4
A
68 73anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 12first strand
Strand 2
A
109 113parallel
Strand 3
A
92 98anti-parallel
Strand 4
A
34 39anti-parallel
Strand 5
A
46 51anti-parallel
Strand 6
A
58 60anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 12first strand
Strand 2
A
109 113parallel
Strand 3
A
92 98anti-parallel
Strand 4
A
104 105anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
122 126first strand
Strand 2
A
137 147anti-parallel
Strand 3
A
178 187anti-parallel
Strand 4
A
165 167anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
122 126first strand
Strand 2
A
137 147anti-parallel
Strand 3
A
178 187anti-parallel
Strand 4
A
171 172anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
153 156first strand
Strand 2
A
197 202anti-parallel
Strand 3
A
207 212anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 7first strand
Strand 2
B
19 25anti-parallel
Strand 3
B
71 76anti-parallel
Strand 4
B
63 68anti-parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 13first strand
Strand 2
B
105 109parallel
Strand 3
B
86 93anti-parallel
Strand 4
B
34 39anti-parallel
Strand 5
B
46 50anti-parallel
Strand 6
B
54 55anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 13first strand
Strand 2
B
105 109parallel
Strand 3
B
86 93anti-parallel
Strand 4
B
98 101anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
117 121first strand
Strand 2
B
132 142anti-parallel
Strand 3
B
176 185anti-parallel
Strand 4
B
162 166anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
156 157first strand
Strand 2
B
148 153anti-parallel
Strand 3
B
194 200anti-parallel
Strand 4
B
208 213anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
4 6first strand
Strand 2
E
18 24anti-parallel
Strand 3
E
78 83anti-parallel
Strand 4
E
68 73anti-parallel
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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
10 12first strand
Strand 2
E
109 113parallel
Strand 3
E
92 98anti-parallel
Strand 4
E
34 39anti-parallel
Strand 5
E
46 51anti-parallel
Strand 6
E
58 60anti-parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
10 12first strand
Strand 2
E
109 113parallel
Strand 3
E
92 98anti-parallel
Strand 4
E
104 105anti-parallel
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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
122 126first strand
Strand 2
E
138 147anti-parallel
Strand 3
E
178 186anti-parallel
Strand 4
E
165 167anti-parallel
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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
122 126first strand
Strand 2
E
138 147anti-parallel
Strand 3
E
178 186anti-parallel
Strand 4
E
171 172anti-parallel
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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
153 156first strand
Strand 2
E
197 202anti-parallel
Strand 3
E
207 212anti-parallel
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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
4 7first strand
Strand 2
F
19 25anti-parallel
Strand 3
F
71 76anti-parallel
Strand 4
F
63 68anti-parallel
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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
10 13first strand
Strand 2
F
105 109parallel
Strand 3
F
86 93anti-parallel
Strand 4
F
34 39anti-parallel
Strand 5
F
46 50anti-parallel
Strand 6
F
54 55anti-parallel
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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
10 13first strand
Strand 2
F
105 109parallel
Strand 3
F
86 93anti-parallel
Strand 4
F
98 101anti-parallel
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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
117 121first strand
Strand 2
F
132 142anti-parallel
Strand 3
F
176 185anti-parallel
Strand 4
F
162 166anti-parallel
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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
156 157first strand
Strand 2
F
148 153anti-parallel
Strand 3
F
194 200anti-parallel
Strand 4
F
208 213anti-parallel
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