Analysis of interatomic Contacts of Structural Units in PDB entry:
8DU0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8DU0 entry

There is 1 chain in PDB entry 8DU0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 19GLU 327
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 8DU0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
35 48Right-handed alpha
Helix 2
AA2
A
64 76Right-handed alpha
Helix 3
AA3
A
89 96Right-handed alpha
Helix 4
AA4
A
96 119Right-handed alpha
Helix 5
AA5
A
128 132Right-handed 310
Helix 6
AA6
A
141 145Right-handed 310
Helix 7
AA7
A
151 153Right-handed 310
Helix 8
AA8
A
154 176Right-handed alpha
Helix 9
AA9
A
200 216Right-handed alpha
Helix 10
AB1
A
235 249Right-handed alpha
Helix 11
AB2
A
265 277Right-handed alpha
Helix 12
AB3
A
299 304Right-handed alpha
Helix 13
AB4
A
312 327Right-handed alpha
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There are 3 sheets in PDB entry 8DU0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 53first strand
Strand 2
A
27 31parallel
Strand 3
A
79 82parallel
Strand 4
A
122 126parallel
Strand 5
A
178 183parallel
Strand 6
A
255 256parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
187 188first strand
Strand 2
A
233 234parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
229 231first strand
Strand 2
A
262 264anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il