Analysis of interatomic Contacts of Structural Units in PDB entry:
8DU2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8DU2 entry

There are 10 chains in PDB entry 8DU2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 263GLY 316
B
 GLY 263GLY 316
C
 GLY 263GLY 316
D
 GLY 263GLY 316
E
 GLY 263GLY 316
F
 GLY 263GLY 316
G
 GLY 263GLY 316
H
 GLY 263GLY 316
I
 GLY 263GLY 316
J
 GLY 263GLY 316
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are no helices in PDB entry 8DU2

There are 8 sheets in PDB entry 8DU2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
288 292first strand
Strand 2
D
288 292parallel
Strand 3
A
288 292parallel
Strand 4
E
288 292parallel
Strand 5
I
288 292parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
295 296first strand
Strand 2
D
295 296parallel
Strand 3
A
295 296parallel
Strand 4
E
295 296parallel
Strand 5
I
295 296parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
300 301first strand
Strand 2
D
300 301parallel
Strand 3
A
300 301parallel
Strand 4
E
300 301parallel
Strand 5
I
300 301parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
304 308first strand
Strand 2
D
304 308parallel
Strand 3
A
304 308parallel
Strand 4
E
304 308parallel
Strand 5
I
304 308parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
288 292first strand
Strand 2
B
288 292parallel
Strand 3
C
288 292parallel
Strand 4
G
288 292parallel
Strand 5
J
288 292parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
295 296first strand
Strand 2
B
295 296parallel
Strand 3
C
295 296parallel
Strand 4
G
295 296parallel
Strand 5
J
295 296parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
300 301first strand
Strand 2
B
300 301parallel
Strand 3
C
300 301parallel
Strand 4
G
300 301parallel
Strand 5
J
300 301parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
304 308first strand
Strand 2
B
304 308parallel
Strand 3
C
304 308parallel
Strand 4
G
304 308parallel
Strand 5
J
304 308parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il