Analysis of interatomic Contacts of Structural Units in PDB entry:
8DUA

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8DUA entry

There are 12 chains in PDB entry 8DUA (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	VAL 570	ASN 664
G	ILE 33	THR 505
H	GLN 1	SER 112
L	ASP 1	LYS 107
A	VAL 570	ASN 664
C	ILE 33	THR 505
D	GLN 1	SER 112
E	ASP 1	LYS 107
F	VAL 570	ASN 664
I	ILE 33	THR 505
J	GLN 1	SER 112
K	ASP 1	LYS 107

There are 33 helices in PDB entry 8DUA. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	570	593	Right-handed alpha
Helix 2	AA2	B	612	620	Right-handed 310
Helix 3	AA3	B	627	635	Right-handed alpha
Helix 4	AA4	B	635	664	Right-handed alpha
Helix 5	AA5	G	69	74	Right-handed 310
Helix 6	AA6	G	98	117	Right-handed alpha
Helix 7	AA7	G	338	352	Right-handed alpha
Helix 8	AA8	G	368	373	Right-handed alpha
Helix 9	AA9	G	387	392	Right-handed alpha
Helix 10	AB1	G	475	483	Right-handed alpha
Helix 11	AB2	H	83	87	Right-handed 310
Helix 12	AB3	A	571	593	Right-handed alpha
Helix 13	AB4	A	612	620	Right-handed 310
Helix 14	AB5	A	627	635	Right-handed alpha
Helix 15	AB6	A	635	664	Right-handed alpha
Helix 16	AB7	C	69	74	Right-handed 310
Helix 17	AB8	C	98	117	Right-handed alpha
Helix 18	AB9	C	338	352	Right-handed alpha
Helix 19	AC1	C	368	373	Right-handed alpha
Helix 20	AC2	C	387	392	Right-handed alpha
Helix 21	AC3	C	475	483	Right-handed alpha
Helix 22	AC4	D	83	87	Right-handed 310
Helix 23	AC5	F	571	593	Right-handed alpha
Helix 24	AC6	F	612	620	Right-handed 310
Helix 25	AC7	F	627	635	Right-handed alpha
Helix 26	AC8	F	635	664	Right-handed alpha
Helix 27	AC9	I	69	74	Right-handed 310
Helix 28	AD1	I	98	117	Right-handed alpha
Helix 29	AD2	I	338	352	Right-handed alpha
Helix 30	AD3	I	368	373	Right-handed alpha
Helix 31	AD4	I	387	392	Right-handed alpha
Helix 32	AD5	I	475	483	Right-handed alpha
Helix 33	AD6	J	83	87	Right-handed 310

There are 31 sheets in PDB entry 8DUA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	603	609	first strand
Strand 2	G	35	40	anti-parallel
Strand 3	G	494	499	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	45	47	first strand
Strand 2	G	487	491	anti-parallel
Strand 3	G	223	228	anti-parallel
Strand 4	G	242	245	anti-parallel
Strand 5	G	84	87	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	272	274	first strand
Strand 2	G	280	284	anti-parallel
Strand 3	G	451	457	anti-parallel
Strand 4	G	465	466	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	293	296	first strand
Strand 2	G	445	448	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	5	7	first strand
Strand 2	H	18	23	anti-parallel
Strand 3	H	77	82	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	46	52	first strand
Strand 2	H	33	39	anti-parallel
Strand 3	H	89	94	anti-parallel
Strand 4	H	107	108	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	5	6	first strand
Strand 2	L	23	24	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	19	21	first strand
Strand 2	L	70	75	anti-parallel
Strand 3	L	62	67	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	44	49	first strand
Strand 2	L	33	38	anti-parallel
Strand 3	L	85	90	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	603	609	first strand
Strand 2	C	35	40	anti-parallel
Strand 3	C	494	499	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	45	47	first strand
Strand 2	C	487	491	anti-parallel
Strand 3	C	223	228	anti-parallel
Strand 4	C	242	245	anti-parallel
Strand 5	C	84	87	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	272	274	first strand
Strand 2	C	281	284	anti-parallel
Strand 3	C	451	454	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	293	296	first strand
Strand 2	C	445	448	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	456	457	first strand
Strand 2	C	465	466	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	5	7	first strand
Strand 2	D	18	23	anti-parallel
Strand 3	D	77	82	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	46	47	first strand
Strand 2	D	33	39	anti-parallel
Strand 3	D	51	52	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	46	47	first strand
Strand 2	D	33	39	anti-parallel
Strand 3	D	89	94	anti-parallel
Strand 4	D	107	108	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	5	6	first strand
Strand 2	E	23	24	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	19	21	first strand
Strand 2	E	70	75	anti-parallel
Strand 3	E	62	67	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	44	49	first strand
Strand 2	E	33	38	anti-parallel
Strand 3	E	85	90	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	603	609	first strand
Strand 2	I	35	40	anti-parallel
Strand 3	I	494	499	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	45	47	first strand
Strand 2	I	487	491	anti-parallel
Strand 3	I	223	228	anti-parallel
Strand 4	I	242	245	anti-parallel
Strand 5	I	84	87	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	272	274	first strand
Strand 2	I	281	284	anti-parallel
Strand 3	I	451	454	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	293	296	first strand
Strand 2	I	445	448	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	456	457	first strand
Strand 2	I	465	466	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	5	7	first strand
Strand 2	J	18	23	anti-parallel
Strand 3	J	77	82	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	46	47	first strand
Strand 2	J	33	39	anti-parallel
Strand 3	J	51	52	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	46	47	first strand
Strand 2	J	33	39	anti-parallel
Strand 3	J	89	94	anti-parallel
Strand 4	J	107	108	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	5	6	first strand
Strand 2	K	23	24	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	19	21	first strand
Strand 2	K	70	75	anti-parallel
Strand 3	K	62	67	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	44	49	first strand
Strand 2	K	33	38	anti-parallel
Strand 3	K	85	90	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8DUA

Analysis of interatomic Contacts of Structural Units in PDB entry:
8DUA