Analysis of interatomic Contacts of Structural Units in PDB entry:
8DUE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8DUE entry

There are 7 chains in PDB entry 8DUE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	GLU 432
B	MET 1	GLU 432
C	MET 1	GLU 432
D	MET 1	GLU 432
E	MET 1	GLU 432
F	MET 1	GLU 432
M	T 7	T 16

There are124 helices in PDB entry 8DUE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1	11	Right-handed alpha
Helix 2	AA2	A	13	19	Right-handed alpha
Helix 3	AA3	A	24	28	Right-handed 310
Helix 4	AA4	A	31	47	Right-handed alpha
Helix 5	AA5	A	52	62	Right-handed alpha
Helix 6	AA6	A	66	78	Right-handed alpha
Helix 7	AA7	A	86	119	Right-handed alpha
Helix 8	AA8	A	130	132	Right-handed 310
Helix 9	AA9	A	133	143	Right-handed alpha
Helix 10	AB1	A	157	168	Right-handed alpha
Helix 11	AB2	A	176	184	Right-handed alpha
Helix 12	AB3	A	203	217	Right-handed alpha
Helix 13	AB4	A	229	243	Right-handed alpha
Helix 14	AB5	A	245	252	Right-handed alpha
Helix 15	AB6	A	258	268	Right-handed alpha
Helix 16	AB7	A	288	300	Right-handed alpha
Helix 17	AB8	A	330	347	Right-handed alpha
Helix 18	AB9	A	367	371	Right-handed 310
Helix 19	AC1	A	376	381	Right-handed alpha
Helix 20	AC2	A	390	396	Right-handed alpha
Helix 21	AC3	B	2	12	Right-handed alpha
Helix 22	AC4	B	12	20	Right-handed alpha
Helix 23	AC5	B	24	28	Right-handed 310
Helix 24	AC6	B	31	48	Right-handed alpha
Helix 25	AC7	B	52	58	Right-handed alpha
Helix 26	AC8	B	66	79	Right-handed alpha
Helix 27	AC9	B	88	119	Right-handed alpha
Helix 28	AD1	B	130	133	Right-handed 310
Helix 29	AD2	B	134	143	Right-handed alpha
Helix 30	AD3	B	157	168	Right-handed alpha
Helix 31	AD4	B	176	184	Right-handed alpha
Helix 32	AD5	B	204	217	Right-handed alpha
Helix 33	AD6	B	229	242	Right-handed alpha
Helix 34	AD7	B	245	250	Right-handed alpha
Helix 35	AD8	B	255	269	Right-handed alpha
Helix 36	AD9	B	286	301	Right-handed alpha
Helix 37	AE1	B	327	347	Right-handed alpha
Helix 38	AE2	B	357	363	Right-handed 310
Helix 39	AE3	B	367	371	Right-handed 310
Helix 40	AE4	B	376	381	Right-handed alpha
Helix 41	AE5	B	390	396	Right-handed alpha
Helix 42	AE6	C	2	11	Right-handed alpha
Helix 43	AE7	C	13	19	Right-handed alpha
Helix 44	AE8	C	31	47	Right-handed alpha
Helix 45	AE9	C	52	63	Right-handed alpha
Helix 46	AF1	C	66	77	Right-handed alpha
Helix 47	AF2	C	86	118	Right-handed alpha
Helix 48	AF3	C	120	124	Right-handed 310
Helix 49	AF4	C	130	132	Right-handed 310
Helix 50	AF5	C	133	143	Right-handed alpha
Helix 51	AF6	C	157	167	Right-handed alpha
Helix 52	AF7	C	176	184	Right-handed alpha
Helix 53	AF8	C	202	217	Right-handed alpha
Helix 54	AF9	C	229	242	Right-handed alpha
Helix 55	AG1	C	245	251	Right-handed alpha
Helix 56	AG2	C	255	269	Right-handed alpha
Helix 57	AG3	C	286	302	Right-handed alpha
Helix 58	AG4	C	312	316	Right-handed 310
Helix 59	AG5	C	327	347	Right-handed alpha
Helix 60	AG6	C	357	361	Right-handed 310
Helix 61	AG7	C	375	381	Right-handed alpha
Helix 62	AG8	C	390	396	Right-handed alpha
Helix 63	AG9	D	2	12	Right-handed alpha
Helix 64	AH1	D	13	19	Right-handed alpha
Helix 65	AH2	D	24	28	Right-handed 310
Helix 66	AH3	D	31	48	Right-handed alpha
Helix 67	AH4	D	52	62	Right-handed alpha
Helix 68	AH5	D	66	80	Right-handed alpha
Helix 69	AH6	D	86	119	Right-handed alpha
Helix 70	AH7	D	130	133	Right-handed 310
Helix 71	AH8	D	134	141	Right-handed alpha
Helix 72	AH9	D	157	168	Right-handed alpha
Helix 73	AI1	D	176	184	Right-handed alpha
Helix 74	AI2	D	202	217	Right-handed alpha
Helix 75	AI3	D	229	242	Right-handed alpha
Helix 76	AI4	D	245	252	Right-handed alpha
Helix 77	AI5	D	255	268	Right-handed alpha
Helix 78	AI6	D	286	301	Right-handed alpha
Helix 79	AI7	D	327	347	Right-handed alpha
Helix 80	AI8	D	357	361	Right-handed 310
Helix 81	AI9	D	367	371	Right-handed 310
Helix 82	AJ1	D	375	381	Right-handed alpha
Helix 83	AJ2	D	390	396	Right-handed alpha
Helix 84	AJ3	E	2	12	Right-handed alpha
Helix 85	AJ4	E	13	18	Right-handed alpha
Helix 86	AJ5	E	24	29	Right-handed alpha
Helix 87	AJ6	E	31	47	Right-handed alpha
Helix 88	AJ7	E	52	63	Right-handed alpha
Helix 89	AJ8	E	66	77	Right-handed alpha
Helix 90	AJ9	E	86	119	Right-handed alpha
Helix 91	AK1	E	120	124	Right-handed 310
Helix 92	AK2	E	130	132	Right-handed 310
Helix 93	AK3	E	133	143	Right-handed alpha
Helix 94	AK4	E	157	166	Right-handed alpha
Helix 95	AK5	E	176	184	Right-handed alpha
Helix 96	AK6	E	202	217	Right-handed alpha
Helix 97	AK7	E	229	243	Right-handed alpha
Helix 98	AK8	E	245	251	Right-handed alpha
Helix 99	AK9	E	255	269	Right-handed alpha
Helix 100	AL1	E	286	301	Right-handed alpha
Helix 101	AL2	E	327	347	Right-handed alpha
Helix 102	AL3	E	357	361	Right-handed 310
Helix 103	AL4	E	376	381	Right-handed alpha
Helix 104	AL5	E	390	397	Right-handed alpha
Helix 105	AL6	F	2	12	Right-handed alpha
Helix 106	AL7	F	13	19	Right-handed alpha
Helix 107	AL8	F	31	48	Right-handed alpha
Helix 108	AL9	F	52	63	Right-handed alpha
Helix 109	AM1	F	66	80	Right-handed alpha
Helix 110	AM2	F	89	119	Right-handed alpha
Helix 111	AM3	F	130	132	Right-handed 310
Helix 112	AM4	F	133	143	Right-handed alpha
Helix 113	AM5	F	154	156	Right-handed 310
Helix 114	AM6	F	157	168	Right-handed alpha
Helix 115	AM7	F	176	183	Right-handed alpha
Helix 116	AM8	F	202	216	Right-handed alpha
Helix 117	AM9	F	229	243	Right-handed alpha
Helix 118	AN1	F	245	251	Right-handed alpha
Helix 119	AN2	F	255	269	Right-handed alpha
Helix 120	AN3	F	286	300	Right-handed alpha
Helix 121	AN4	F	327	347	Right-handed alpha
Helix 122	AN5	F	357	361	Right-handed 310
Helix 123	AN6	F	367	371	Right-handed 310
Helix 124	AN7	F	375	381	Right-handed alpha

There are 11 sheets in PDB entry 8DUE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	152	153	first strand
Strand 2	B	275	279	anti-parallel
Strand 3	B	221	225	parallel
Strand 4	B	307	310	parallel
Strand 5	B	349	354	parallel
Strand 6	B	192	196	parallel
Strand 7	B	383	388	parallel
Strand 8	B	399	402	anti-parallel
Strand 9	B	417	422	anti-parallel
Strand 10	B	427	429	anti-parallel

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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	275	279	first strand
Strand 2	A	221	225	parallel
Strand 3	A	307	310	parallel
Strand 4	A	349	355	parallel
Strand 5	A	192	197	parallel
Strand 6	A	385	388	parallel
Strand 7	A	398	403	anti-parallel
Strand 8	A	416	422	anti-parallel
Strand 9	A	427	429	anti-parallel

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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	152	153	first strand
Strand 2	C	274	279	anti-parallel
Strand 3	C	220	225	parallel
Strand 4	C	307	310	parallel
Strand 5	C	349	355	parallel
Strand 6	C	192	197	parallel
Strand 7	C	383	388	parallel
Strand 8	C	398	406	anti-parallel
Strand 9	C	416	422	anti-parallel
Strand 10	C	427	430	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	171	172	first strand
Strand 2	B	187	188	anti-parallel

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There are 10 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	152	153	first strand
Strand 2	D	275	277	anti-parallel
Strand 3	D	221	225	parallel
Strand 4	D	307	311	parallel
Strand 5	D	349	354	parallel
Strand 6	D	192	196	parallel
Strand 7	D	383	388	parallel
Strand 8	D	399	406	anti-parallel
Strand 9	D	416	422	anti-parallel
Strand 10	D	427	430	anti-parallel

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There are 10 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	152	153	first strand
Strand 2	E	274	279	anti-parallel
Strand 3	E	220	225	parallel
Strand 4	E	307	310	parallel
Strand 5	E	349	355	parallel
Strand 6	E	191	197	parallel
Strand 7	E	383	386	parallel
Strand 8	E	399	404	anti-parallel
Strand 9	E	416	422	anti-parallel
Strand 10	E	427	430	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	152	153	first strand
Strand 2	F	275	279	anti-parallel
Strand 3	F	221	225	parallel
Strand 4	F	309	310	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	171	172	first strand
Strand 2	E	187	188	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	171	172	first strand
Strand 2	F	187	188	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	350	355	first strand
Strand 2	F	192	197	parallel
Strand 3	F	384	386	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	420	422	first strand
Strand 2	F	427	429	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8DUE

Analysis of interatomic Contacts of Structural Units in PDB entry:
8DUE