Analysis of interatomic Contacts of Structural Units in PDB entry:
8DUK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8DUK entry

There are 4 chains in PDB entry 8DUK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 308HIS 550
B
 LEU 306LEU 549
C
 LEU 308HIS 550
D
 LEU 306HIS 550
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 8DUK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
311 323Right-handed alpha
Helix 2
AA2
A
341 362Right-handed alpha
Helix 3
AA3
A
366 370Right-handed 310
Helix 4
AA4
A
371 396Right-handed alpha
Helix 5
AA5
A
412 416Right-handed alpha
Helix 6
AA6
A
420 439Right-handed alpha
Helix 7
AA7
A
441 456Right-handed alpha
Helix 8
AA8
A
457 461Right-handed 310
Helix 9
AA9
A
466 494Right-handed alpha
Helix 10
AB1
A
496 527Right-handed alpha
Helix 11
AB2
A
536 545Right-handed alpha
Helix 12
AB3
B
306 310Right-handed 310
Helix 13
AB4
B
311 322Right-handed alpha
Helix 14
AB5
B
342 363Right-handed alpha
Helix 15
AB6
B
366 370Right-handed 310
Helix 16
AB7
B
371 395Right-handed alpha
Helix 17
AB8
B
421 439Right-handed alpha
Helix 18
AB9
B
441 456Right-handed alpha
Helix 19
AC1
B
466 493Right-handed alpha
Helix 20
AC2
B
496 528Right-handed alpha
Helix 21
AC3
B
536 545Right-handed alpha
Helix 22
AC4
C
311 323Right-handed alpha
Helix 23
AC5
C
341 362Right-handed alpha
Helix 24
AC6
C
366 370Right-handed 310
Helix 25
AC7
C
371 396Right-handed alpha
Helix 26
AC8
C
412 416Right-handed alpha
Helix 27
AC9
C
420 439Right-handed alpha
Helix 28
AD1
C
441 456Right-handed alpha
Helix 29
AD2
C
457 461Right-handed 310
Helix 30
AD3
C
466 494Right-handed alpha
Helix 31
AD4
C
496 527Right-handed alpha
Helix 32
AD5
C
536 545Right-handed alpha
Helix 33
AD6
D
306 310Right-handed 310
Helix 34
AD7
D
311 322Right-handed alpha
Helix 35
AD8
D
342 362Right-handed alpha
Helix 36
AD9
D
366 370Right-handed 310
Helix 37
AE1
D
371 395Right-handed alpha
Helix 38
AE2
D
421 439Right-handed alpha
Helix 39
AE3
D
441 456Right-handed alpha
Helix 40
AE4
D
467 493Right-handed alpha
Helix 41
AE5
D
496 528Right-handed alpha
Helix 42
AE6
D
536 545Right-handed alpha
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There are 4 sheets in PDB entry 8DUK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
401 405first strand
Strand 2
A
408 411anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
401 405first strand
Strand 2
B
408 411anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
401 405first strand
Strand 2
C
408 411anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
401 405first strand
Strand 2
D
408 411anti-parallel
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