Analysis of interatomic Contacts of Structural Units in PDB entry:
8DUO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8DUO entry

There are 6 chains in PDB entry 8DUO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	GLU 432
B	MET 1	GLU 432
C	MET 1	GLU 432
D	MET 1	GLU 432
E	MET 1	GLU 432
F	MET 1	GLU 432

There are117 helices in PDB entry 8DUO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	2	10	Right-handed alpha
Helix 2	2	A	14	18	Right-handed alpha
Helix 3	3	A	25	27	Right-handed 310
Helix 4	4	A	32	46	Right-handed alpha
Helix 5	5	A	53	62	Right-handed alpha
Helix 6	6	A	67	79	Right-handed alpha
Helix 7	7	A	87	118	Right-handed alpha
Helix 8	8	A	131	133	Right-handed 310
Helix 9	9	A	136	142	Right-handed alpha
Helix 10	10	A	158	161	Right-handed alpha
Helix 11	11	A	177	182	Right-handed alpha
Helix 12	12	A	204	217	Right-handed alpha
Helix 13	13	A	230	242	Right-handed alpha
Helix 14	14	A	246	251	Right-handed alpha
Helix 15	15	A	259	267	Right-handed alpha
Helix 16	16	A	289	299	Right-handed alpha
Helix 17	17	A	313	315	Right-handed 310
Helix 18	18	A	331	346	Right-handed alpha
Helix 19	19	A	368	370	Right-handed 310
Helix 20	20	A	391	395	Right-handed alpha
Helix 21	21	A	413	415	Right-handed 310
Helix 22	22	B	2	11	Right-handed alpha
Helix 23	23	B	13	22	Right-handed alpha
Helix 24	24	B	25	27	Right-handed 310
Helix 25	25	B	32	47	Right-handed alpha
Helix 26	26	B	53	57	Right-handed alpha
Helix 27	27	B	67	78	Right-handed alpha
Helix 28	28	B	89	118	Right-handed alpha
Helix 29	29	B	135	142	Right-handed alpha
Helix 30	30	B	158	167	Right-handed alpha
Helix 31	31	B	177	183	Right-handed alpha
Helix 32	32	B	205	216	Right-handed alpha
Helix 33	33	B	230	241	Right-handed alpha
Helix 34	34	B	246	249	Right-handed alpha
Helix 35	35	B	256	267	Right-handed alpha
Helix 36	36	B	287	301	Right-handed alpha
Helix 37	37	B	330	346	Right-handed alpha
Helix 38	38	B	368	370	Right-handed 310
Helix 39	39	B	376	380	Right-handed alpha
Helix 40	40	B	392	395	Right-handed alpha
Helix 41	41	C	2	10	Right-handed alpha
Helix 42	42	C	14	18	Right-handed alpha
Helix 43	43	C	32	46	Right-handed alpha
Helix 44	44	C	53	62	Right-handed alpha
Helix 45	45	C	70	76	Right-handed alpha
Helix 46	46	C	87	117	Right-handed alpha
Helix 47	47	C	131	142	Right-handed 310
Helix 48	48	C	162	164	Right-handed 310
Helix 49	49	C	177	183	Right-handed alpha
Helix 50	50	C	203	216	Right-handed alpha
Helix 51	51	C	230	241	Right-handed alpha
Helix 52	52	C	247	251	Right-handed alpha
Helix 53	53	C	258	268	Right-handed alpha
Helix 54	54	C	287	298	Right-handed alpha
Helix 55	55	C	313	315	Right-handed 310
Helix 56	56	C	328	346	Right-handed alpha
Helix 57	57	C	358	360	Right-handed 310
Helix 58	58	C	391	395	Right-handed alpha
Helix 59	59	D	2	11	Right-handed alpha
Helix 60	60	D	13	18	Right-handed alpha
Helix 61	61	D	25	27	Right-handed 310
Helix 62	62	D	32	47	Right-handed alpha
Helix 63	63	D	53	61	Right-handed alpha
Helix 64	64	D	67	78	Right-handed alpha
Helix 65	65	D	89	118	Right-handed alpha
Helix 66	66	D	131	133	Right-handed 310
Helix 67	67	D	135	140	Right-handed alpha
Helix 68	68	D	158	167	Right-handed alpha
Helix 69	69	D	177	183	Right-handed alpha
Helix 70	70	D	203	216	Right-handed alpha
Helix 71	71	D	231	242	Right-handed alpha
Helix 72	72	D	256	267	Right-handed alpha
Helix 73	73	D	287	300	Right-handed alpha
Helix 74	74	D	313	315	Right-handed 310
Helix 75	75	D	328	346	Right-handed alpha
Helix 76	76	D	368	370	Right-handed 310
Helix 77	77	D	376	380	Right-handed alpha
Helix 78	78	D	391	396	Right-handed alpha
Helix 79	79	E	2	11	Right-handed alpha
Helix 80	80	E	14	17	Right-handed alpha
Helix 81	81	E	25	28	Right-handed alpha
Helix 82	82	E	32	46	Right-handed alpha
Helix 83	83	E	53	62	Right-handed alpha
Helix 84	84	E	67	76	Right-handed alpha
Helix 85	85	E	87	117	Right-handed alpha
Helix 86	86	E	121	123	Right-handed 310
Helix 87	87	E	131	142	Right-handed 310
Helix 88	88	E	158	165	Right-handed alpha
Helix 89	89	E	177	183	Right-handed alpha
Helix 90	90	E	203	217	Right-handed alpha
Helix 91	91	E	233	241	Right-handed alpha
Helix 92	92	E	246	251	Right-handed alpha
Helix 93	93	E	257	268	Right-handed alpha
Helix 94	94	E	289	300	Right-handed alpha
Helix 95	95	E	329	346	Right-handed alpha
Helix 96	96	E	358	360	Right-handed 310
Helix 97	97	E	377	380	Right-handed alpha
Helix 98	98	E	391	395	Right-handed alpha
Helix 99	99	F	3	11	Right-handed alpha
Helix 100	100	F	13	18	Right-handed alpha
Helix 101	101	F	32	47	Right-handed alpha
Helix 102	102	F	53	58	Right-handed alpha
Helix 103	103	F	67	78	Right-handed alpha
Helix 104	104	F	90	118	Right-handed alpha
Helix 105	105	F	131	143	Right-handed 310
Helix 106	106	F	150	152	Right-handed 310
Helix 107	107	F	160	165	Right-handed alpha
Helix 108	108	F	177	183	Right-handed alpha
Helix 109	109	F	203	217	Right-handed alpha
Helix 110	110	F	230	241	Right-handed alpha
Helix 111	111	F	246	249	Right-handed alpha
Helix 112	112	F	256	267	Right-handed alpha
Helix 113	113	F	287	300	Right-handed alpha
Helix 114	114	F	328	345	Right-handed alpha
Helix 115	115	F	358	360	Right-handed 310
Helix 116	116	F	368	370	Right-handed 310
Helix 117	117	F	376	380	Right-handed alpha

There are 12 sheets in PDB entry 8DUO. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	385	387	first strand
Strand 2	A	192	197	parallel
Strand 3	A	349	355	parallel
Strand 4	A	307	310	parallel
Strand 5	A	221	225	parallel
Strand 6	A	275	279	parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	420	422	first strand
Strand 2	A	427	429	anti-parallel

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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	192	194	first strand
Strand 2	B	349	352	parallel
Strand 3	B	307	310	parallel
Strand 4	B	221	225	parallel
Strand 5	B	275	279	parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	420	422	first strand
Strand 2	B	427	429	anti-parallel

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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	402	406	first strand
Strand 2	C	383	386	anti-parallel
Strand 3	C	192	197	parallel
Strand 4	C	349	355	parallel
Strand 5	C	307	310	parallel
Strand 6	C	220	225	parallel
Strand 7	C	274	279	parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	419	422	first strand
Strand 2	C	427	430	anti-parallel

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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	350	354	first strand
Strand 2	D	192	196	parallel
Strand 3	D	384	388	parallel
Strand 4	D	399	403	anti-parallel
Strand 5	D	417	422	anti-parallel
Strand 6	D	427	430	anti-parallel

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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	275	279	first strand
Strand 2	D	221	225	parallel
Strand 3	D	309	311	parallel

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There are 6 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	383	386	first strand
Strand 2	E	192	196	parallel
Strand 3	E	349	352	parallel
Strand 4	E	307	310	parallel
Strand 5	E	221	225	parallel
Strand 6	E	275	279	parallel

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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	350	352	first strand
Strand 2	F	192	196	parallel
Strand 3	F	384	386	parallel

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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	221	225	first strand
Strand 2	F	275	279	parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	420	422	first strand
Strand 2	F	427	429	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8DUO

Analysis of interatomic Contacts of Structural Units in PDB entry:
8DUO