Analysis of interatomic Contacts of Structural Units in PDB entry:
8DV1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8DV1 entry

There are 2 chains in PDB entry 8DV1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 330	SER 530
D	ILE 21	ASP 615

There are 43 helices in PDB entry 8DV1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	337	342	Right-handed alpha
Helix 2	AA2	A	349	353	Right-handed 310
Helix 3	AA3	A	365	370	Right-handed alpha
Helix 4	AA4	A	386	389	Right-handed 310
Helix 5	AA5	A	405	410	Right-handed 310
Helix 6	AA6	A	416	422	Right-handed alpha
Helix 7	AA7	A	438	443	Right-handed alpha
Helix 8	AA8	A	520	522	Right-handed 310
Helix 9	AA9	D	22	53	Right-handed alpha
Helix 10	AB1	D	55	81	Right-handed alpha
Helix 11	AB2	D	82	83	Right-handed 310
Helix 12	AB3	D	84	88	Right-handed 310
Helix 13	AB4	D	90	101	Right-handed alpha
Helix 14	AB5	D	109	129	Right-handed alpha
Helix 15	AB6	D	137	141	Right-handed 310
Helix 16	AB7	D	147	155	Right-handed alpha
Helix 17	AB8	D	157	172	Right-handed alpha
Helix 18	AB9	D	172	194	Right-handed alpha
Helix 19	AC1	D	198	205	Right-handed alpha
Helix 20	AC2	D	206	208	Right-handed 310
Helix 21	AC3	D	220	252	Right-handed alpha
Helix 22	AC4	D	265	267	Right-handed 310
Helix 23	AC5	D	275	277	Right-handed 310
Helix 24	AC6	D	278	283	Right-handed alpha
Helix 25	AC7	D	293	300	Right-handed alpha
Helix 26	AC8	D	303	317	Right-handed alpha
Helix 27	AC9	D	324	331	Right-handed alpha
Helix 28	AD1	D	365	385	Right-handed alpha
Helix 29	AD2	D	386	388	Right-handed 310
Helix 30	AD3	D	389	393	Right-handed 310
Helix 31	AD4	D	399	413	Right-handed alpha
Helix 32	AD5	D	414	421	Right-handed alpha
Helix 33	AD6	D	431	447	Right-handed alpha
Helix 34	AD7	D	449	465	Right-handed alpha
Helix 35	AD8	D	469	471	Right-handed 310
Helix 36	AD9	D	472	485	Right-handed alpha
Helix 37	AE1	D	498	502	Right-handed 310
Helix 38	AE2	D	503	508	Right-handed alpha
Helix 39	AE3	D	513	533	Right-handed alpha
Helix 40	AE4	D	538	542	Right-handed 310
Helix 41	AE5	D	547	559	Right-handed alpha
Helix 42	AE6	D	565	575	Right-handed alpha
Helix 43	AE7	D	581	598	Right-handed alpha

There are 6 sheets in PDB entry 8DV1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	354	358	first strand
Strand 2	A	394	403	anti-parallel
Strand 3	A	507	516	anti-parallel
Strand 4	A	432	437	anti-parallel
Strand 5	A	376	379	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	361	362	first strand
Strand 2	A	524	525	parallel
Strand 3	A	391	392	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	452	454	first strand
Strand 2	A	492	494	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	473	474	first strand
Strand 2	A	488	489	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	262	263	first strand
Strand 2	D	487	488	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	347	350	first strand
Strand 2	D	356	359	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8DV1

Analysis of interatomic Contacts of Structural Units in PDB entry:
8DV1