Analysis of interatomic Contacts of Structural Units in PDB entry:
8DV2

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8DV2 entry

There are 2 chains in PDB entry 8DV2 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 330	SER 530
D	ILE 21	ASP 615

There are 41 helices in PDB entry 8DV2. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	338	343	Right-handed alpha
Helix 2	AA2	A	349	353	Right-handed 310
Helix 3	AA3	A	365	370	Right-handed alpha
Helix 4	AA4	A	386	389	Right-handed 310
Helix 5	AA5	A	405	410	Right-handed 310
Helix 6	AA6	A	416	422	Right-handed alpha
Helix 7	AA7	A	438	443	Right-handed alpha
Helix 8	AA8	D	22	53	Right-handed alpha
Helix 9	AA9	D	55	80	Right-handed alpha
Helix 10	AB1	D	81	83	Right-handed 310
Helix 11	AB2	D	84	88	Right-handed 310
Helix 12	AB3	D	90	101	Right-handed alpha
Helix 13	AB4	D	109	129	Right-handed alpha
Helix 14	AB5	D	147	155	Right-handed alpha
Helix 15	AB6	D	157	170	Right-handed alpha
Helix 16	AB7	D	171	194	Right-handed alpha
Helix 17	AB8	D	198	205	Right-handed alpha
Helix 18	AB9	D	206	208	Right-handed 310
Helix 19	AC1	D	219	249	Right-handed alpha
Helix 20	AC2	D	265	267	Right-handed 310
Helix 21	AC3	D	275	277	Right-handed 310
Helix 22	AC4	D	278	283	Right-handed alpha
Helix 23	AC5	D	293	300	Right-handed alpha
Helix 24	AC6	D	303	318	Right-handed alpha
Helix 25	AC7	D	324	331	Right-handed alpha
Helix 26	AC8	D	365	385	Right-handed alpha
Helix 27	AC9	D	386	388	Right-handed 310
Helix 28	AD1	D	389	393	Right-handed 310
Helix 29	AD2	D	399	414	Right-handed alpha
Helix 30	AD3	D	414	421	Right-handed alpha
Helix 31	AD4	D	431	447	Right-handed alpha
Helix 32	AD5	D	449	465	Right-handed alpha
Helix 33	AD6	D	472	484	Right-handed alpha
Helix 34	AD7	D	498	502	Right-handed 310
Helix 35	AD8	D	503	508	Right-handed alpha
Helix 36	AD9	D	513	533	Right-handed alpha
Helix 37	AE1	D	538	542	Right-handed 310
Helix 38	AE2	D	547	559	Right-handed alpha
Helix 39	AE3	D	565	575	Right-handed alpha
Helix 40	AE4	D	581	599	Right-handed alpha
Helix 41	AE5	D	600	602	Right-handed 310

There are 7 sheets in PDB entry 8DV2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	354	358	first strand
Strand 2	A	394	403	anti-parallel
Strand 3	A	507	516	anti-parallel
Strand 4	A	432	437	anti-parallel
Strand 5	A	376	379	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	361	362	first strand
Strand 2	A	524	525	parallel
Strand 3	A	391	392	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	452	454	first strand
Strand 2	A	492	494	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	473	474	first strand
Strand 2	A	488	489	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	131	133	first strand
Strand 2	D	141	143	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	262	263	first strand
Strand 2	D	487	488	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	347	350	first strand
Strand 2	D	356	359	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8DV2

Analysis of interatomic Contacts of Structural Units in PDB entry:
8DV2