Analysis of interatomic Contacts of Structural Units in PDB entry:
8DV4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8DV4 entry

There are 4 chains in PDB entry 8DV4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 6ARG 278
B
 ILE 3ASP 100
D
 GLY 1ASN 191
E
 ALA 2ASP 245
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 8DV4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
59 89Right-handed alpha
Helix 2
AA2
A
137 149Right-handed alpha
Helix 3
AA3
A
151 164Right-handed alpha
Helix 4
AA4
A
164 177Right-handed alpha
Helix 5
AA5
A
177 182Right-handed alpha
Helix 6
AA6
A
265 269Right-handed 310
Helix 7
AA7
D
67 71Right-handed 310
Helix 8
AA8
D
81 85Right-handed 310
Helix 9
AA9
D
185 190Right-handed alpha
Helix 10
AB1
E
82 86Right-handed 310
Helix 11
AB2
E
117 121Right-handed 310
Helix 12
AB3
E
132 140Right-handed alpha
Helix 13
AB4
E
199 203Right-handed alpha
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There are 17 sheets in PDB entry 8DV4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 49first strand
Strand 2
A
35 41anti-parallel
Strand 3
A
23 32anti-parallel
Strand 4
A
8 20anti-parallel
Strand 5
A
94 104anti-parallel
Strand 6
A
110 118anti-parallel
Strand 7
A
121 127anti-parallel
Strand 8
A
130 133anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
188 193first strand
Strand 2
A
201 211anti-parallel
Strand 3
A
243 252anti-parallel
Strand 4
A
231 232anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
188 193first strand
Strand 2
A
201 211anti-parallel
Strand 3
A
243 252anti-parallel
Strand 4
A
236 237anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
225 226first strand
Strand 2
A
217 222anti-parallel
Strand 3
A
260 264anti-parallel
Strand 4
A
273 276anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
8 13first strand
Strand 2
B
23 32anti-parallel
Strand 3
B
64 72anti-parallel
Strand 4
B
52 53anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
8 13first strand
Strand 2
B
23 32anti-parallel
Strand 3
B
64 72anti-parallel
Strand 4
B
57 58anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
46 47first strand
Strand 2
B
38 43anti-parallel
Strand 3
B
80 85anti-parallel
Strand 4
B
93 96anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
3 6first strand
Strand 2
D
23 26anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
11 14first strand
Strand 2
D
107 112parallel
Strand 3
D
86 94anti-parallel
Strand 4
D
31 38anti-parallel
Strand 5
D
45 50anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
11 14first strand
Strand 2
D
107 112parallel
Strand 3
D
86 94anti-parallel
Strand 4
D
102 103anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
19 21first strand
Strand 2
D
75 77anti-parallel
Strand 3
D
62 65anti-parallel
Strand 4
D
56 59anti-parallel
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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
155 157first strand
Strand 2
D
171 179anti-parallel
Strand 3
D
134 139anti-parallel
Strand 4
D
121 127anti-parallel
Strand 5
E
125 130anti-parallel
Strand 6
E
141 151anti-parallel
Strand 7
E
189 198anti-parallel
Strand 8
E
171 173anti-parallel
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There are 8 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
161 164first strand
Strand 2
D
171 179anti-parallel
Strand 3
D
134 139anti-parallel
Strand 4
D
121 127anti-parallel
Strand 5
E
125 130anti-parallel
Strand 6
E
141 151anti-parallel
Strand 7
E
189 198anti-parallel
Strand 8
E
178 179anti-parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
4 7first strand
Strand 2
E
19 25anti-parallel
Strand 3
E
73 78anti-parallel
Strand 4
E
64 67anti-parallel
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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
10 14first strand
Strand 2
E
110 115parallel
Strand 3
E
87 94anti-parallel
Strand 4
E
31 37anti-parallel
Strand 5
E
44 51anti-parallel
Strand 6
E
54 57anti-parallel
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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
10 14first strand
Strand 2
E
110 115parallel
Strand 3
E
87 94anti-parallel
Strand 4
E
105 106anti-parallel
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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
165 167first strand
Strand 2
E
156 162anti-parallel
Strand 3
E
208 215anti-parallel
Strand 4
E
234 241anti-parallel
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