Analysis of interatomic Contacts of Structural Units in PDB entry:
8DVC

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8DVC entry

There are 5 chains in PDB entry 8DVC (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 3	ASP 270
B	MET 1	ASP 270
C	MET 1	ASP 270
D	MET 1	ASP 270
E	SER 2	ILE 211

There are 74 helices in PDB entry 8DVC. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	3	8	Right-handed alpha
Helix 2	AA2	A	29	34	Right-handed 310
Helix 3	AA3	A	36	40	Right-handed 310
Helix 4	AA4	A	58	62	Right-handed 310
Helix 5	AA5	A	65	68	Right-handed 310
Helix 6	AA6	A	69	84	Right-handed alpha
Helix 7	AA7	A	95	108	Right-handed alpha
Helix 8	AA8	A	136	149	Right-handed alpha
Helix 9	AA9	A	149	163	Right-handed alpha
Helix 10	AB1	A	168	179	Right-handed alpha
Helix 11	AB2	A	182	196	Right-handed alpha
Helix 12	AB3	A	198	205	Right-handed 310
Helix 13	AB4	A	221	232	Right-handed alpha
Helix 14	AB5	A	247	252	Right-handed alpha
Helix 15	AB6	A	252	266	Right-handed alpha
Helix 16	AB7	B	3	8	Right-handed alpha
Helix 17	AB8	B	29	34	Right-handed 310
Helix 18	AB9	B	36	40	Right-handed 310
Helix 19	AC1	B	58	62	Right-handed 310
Helix 20	AC2	B	63	68	Right-handed alpha
Helix 21	AC3	B	69	84	Right-handed alpha
Helix 22	AC4	B	95	108	Right-handed alpha
Helix 23	AC5	B	135	149	Right-handed alpha
Helix 24	AC6	B	149	163	Right-handed alpha
Helix 25	AC7	B	168	179	Right-handed alpha
Helix 26	AC8	B	182	196	Right-handed alpha
Helix 27	AC9	B	198	205	Right-handed 310
Helix 28	AD1	B	221	232	Right-handed alpha
Helix 29	AD2	B	247	252	Right-handed alpha
Helix 30	AD3	B	252	266	Right-handed alpha
Helix 31	AD4	C	29	34	Right-handed 310
Helix 32	AD5	C	36	40	Right-handed 310
Helix 33	AD6	C	58	62	Right-handed 310
Helix 34	AD7	C	63	68	Right-handed alpha
Helix 35	AD8	C	70	84	Right-handed alpha
Helix 36	AD9	C	95	108	Right-handed alpha
Helix 37	AE1	C	135	149	Right-handed alpha
Helix 38	AE2	C	149	163	Right-handed alpha
Helix 39	AE3	C	168	179	Right-handed alpha
Helix 40	AE4	C	182	194	Right-handed alpha
Helix 41	AE5	C	198	205	Right-handed 310
Helix 42	AE6	C	221	230	Right-handed alpha
Helix 43	AE7	C	247	252	Right-handed alpha
Helix 44	AE8	C	252	266	Right-handed alpha
Helix 45	AE9	D	3	8	Right-handed alpha
Helix 46	AF1	D	29	34	Right-handed 310
Helix 47	AF2	D	36	40	Right-handed 310
Helix 48	AF3	D	58	62	Right-handed 310
Helix 49	AF4	D	65	69	Right-handed 310
Helix 50	AF5	D	70	84	Right-handed alpha
Helix 51	AF6	D	95	108	Right-handed alpha
Helix 52	AF7	D	135	149	Right-handed alpha
Helix 53	AF8	D	149	163	Right-handed alpha
Helix 54	AF9	D	168	181	Right-handed alpha
Helix 55	AG1	D	182	196	Right-handed alpha
Helix 56	AG2	D	198	205	Right-handed 310
Helix 57	AG3	D	221	232	Right-handed alpha
Helix 58	AG4	D	247	252	Right-handed alpha
Helix 59	AG5	D	252	266	Right-handed alpha
Helix 60	AG6	E	3	8	Right-handed alpha
Helix 61	AG7	E	29	34	Right-handed 310
Helix 62	AG8	E	36	40	Right-handed 310
Helix 63	AG9	E	58	62	Right-handed 310
Helix 64	AH1	E	65	68	Right-handed 310
Helix 65	AH2	E	69	84	Right-handed alpha
Helix 66	AH3	E	95	108	Right-handed alpha
Helix 67	AH4	E	135	149	Right-handed alpha
Helix 68	AH5	E	149	163	Right-handed alpha
Helix 69	AH6	E	168	179	Right-handed alpha
Helix 70	AH7	E	182	196	Right-handed alpha
Helix 71	AH8	E	201	205	Right-handed 310
Helix 72	AH9	E	221	232	Right-handed alpha
Helix 73	AI1	E	247	252	Right-handed alpha
Helix 74	AI2	E	252	266	Right-handed alpha

There are 6 sheets in PDB entry 8DVC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	11	14	first strand
Strand 2	A	45	48	anti-parallel
Strand 3	A	19	23	parallel
Strand 4	A	89	94	parallel
Strand 5	A	112	118	parallel
Strand 6	A	209	216	parallel
Strand 7	A	236	244	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	125	126	first strand
Strand 2	A	134	135	parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	11	14	first strand
Strand 2	B	45	49	anti-parallel
Strand 3	B	19	23	parallel
Strand 4	B	89	94	parallel
Strand 5	B	112	118	parallel
Strand 6	B	209	216	parallel
Strand 7	B	236	244	parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	11	14	first strand
Strand 2	C	45	48	anti-parallel
Strand 3	C	19	23	parallel
Strand 4	C	89	94	parallel
Strand 5	C	112	118	parallel
Strand 6	C	209	216	parallel
Strand 7	C	236	244	parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	14	first strand
Strand 2	D	45	48	anti-parallel
Strand 3	D	19	22	parallel
Strand 4	D	89	94	parallel
Strand 5	D	112	118	parallel
Strand 6	D	209	216	parallel
Strand 7	D	236	244	parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	11	14	first strand
Strand 2	E	45	48	anti-parallel
Strand 3	E	19	23	parallel
Strand 4	E	89	94	parallel
Strand 5	E	112	118	parallel
Strand 6	E	209	216	parallel
Strand 7	E	236	244	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8DVC

Analysis of interatomic Contacts of Structural Units in PDB entry:
8DVC