Analysis of interatomic Contacts of Structural Units in PDB entry:
8DVH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8DVH entry

There are 2 chains in PDB entry 8DVH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 352ILE 547
B
 VAL 348ASN 535
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 8DVH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
406 422Right-handed alpha
Helix 2
AA2
A
425 427Right-handed 310
Helix 3
AA3
A
446 460Right-handed alpha
Helix 4
AA4
A
484 495Right-handed alpha
Helix 5
AA5
A
505 507Right-handed 310
Helix 6
AA6
A
508 514Right-handed 310
Helix 7
AA7
A
524 533Right-handed alpha
Helix 8
AA8
B
406 422Right-handed alpha
Helix 9
AA9
B
425 427Right-handed 310
Helix 10
AB1
B
446 460Right-handed alpha
Helix 11
AB2
B
484 495Right-handed alpha
Helix 12
AB3
B
505 507Right-handed 310
Helix 13
AB4
B
508 514Right-handed 310
Helix 14
AB5
B
524 533Right-handed alpha
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There are 7 sheets in PDB entry 8DVH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
353 361first strand
Strand 2
A
365 377anti-parallel
Strand 3
A
429 434anti-parallel
Strand 4
A
383 387parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
401 405first strand
Strand 2
A
392 396anti-parallel
Strand 3
B
400 405anti-parallel
Strand 4
B
392 396anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
467 469first strand
Strand 2
A
499 503parallel
Strand 3
A
518 522parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
472 473first strand
Strand 2
A
479 480anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
354 360first strand
Strand 2
B
366 377anti-parallel
Strand 3
B
429 434anti-parallel
Strand 4
B
383 387parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
467 469first strand
Strand 2
B
499 503parallel
Strand 3
B
518 522parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
472 473first strand
Strand 2
B
479 480anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il