Analysis of interatomic Contacts of Structural Units in PDB entry:
8DVR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8DVR entry

There are 2 chains in PDB entry 8DVR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 242MET 923
B
 G 2 C 64
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 8DVR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
244 256Right-handed alpha
Helix 2
AA2
A
266 284Right-handed alpha
Helix 3
AA3
A
299 314Right-handed alpha
Helix 4
AA4
A
333 340Right-handed alpha
Helix 5
AA5
A
347 358Right-handed alpha
Helix 6
AA6
A
362 366Right-handed 310
Helix 7
AA7
A
374 377Right-handed 310
Helix 8
AA8
A
381 396Right-handed alpha
Helix 9
AA9
A
419 435Right-handed alpha
Helix 10
AB1
A
448 452Right-handed 310
Helix 11
AB2
A
469 487Right-handed alpha
Helix 12
AB3
A
492 497Right-handed alpha
Helix 13
AB4
A
506 521Right-handed alpha
Helix 14
AB5
A
529 558Right-handed alpha
Helix 15
AB6
A
559 576Right-handed alpha
Helix 16
AB7
A
580 602Right-handed alpha
Helix 17
AB8
A
603 607Right-handed 310
Helix 18
AB9
A
608 625Right-handed alpha
Helix 19
AC1
A
636 638Right-handed 310
Helix 20
AC2
A
639 650Right-handed alpha
Helix 21
AC3
A
744 771Right-handed alpha
Helix 22
AC4
A
772 794Right-handed alpha
Helix 23
AC5
A
835 840Right-handed alpha
Helix 24
AC6
A
889 892Right-handed 310
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There are 5 sheets in PDB entry 8DVR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
294 296first strand
Strand 2
A
369 372parallel
Strand 3
A
407 408parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
461 462first strand
Strand 2
A
737 742parallel
Strand 3
A
711 715parallel
Strand 4
A
630 633parallel
Strand 5
A
693 696parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
816 819first strand
Strand 2
A
807 809anti-parallel
Strand 3
A
893 895anti-parallel
Strand 4
A
902 903anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
831 833first strand
Strand 2
A
823 825anti-parallel
Strand 3
A
916 917parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
842 846first strand
Strand 2
A
857 864anti-parallel
Strand 3
A
874 878anti-parallel
Strand 4
A
884 887anti-parallel
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