Analysis of interatomic Contacts of Structural Units in PDB entry:
8DVS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8DVS entry

There are 2 chains in PDB entry 8DVS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 241GLU 922
B
 G 1 C 64
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 8DVS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
244 252Right-handed alpha
Helix 2
AA2
A
269 282Right-handed alpha
Helix 3
AA3
A
299 315Right-handed alpha
Helix 4
AA4
A
333 340Right-handed alpha
Helix 5
AA5
A
347 357Right-handed alpha
Helix 6
AA6
A
362 366Right-handed 310
Helix 7
AA7
A
373 377Right-handed 310
Helix 8
AA8
A
381 395Right-handed alpha
Helix 9
AA9
A
419 435Right-handed alpha
Helix 10
AB1
A
445 450Right-handed alpha
Helix 11
AB2
A
469 490Right-handed alpha
Helix 12
AB3
A
506 522Right-handed alpha
Helix 13
AB4
A
529 558Right-handed alpha
Helix 14
AB5
A
559 577Right-handed alpha
Helix 15
AB6
A
580 603Right-handed alpha
Helix 16
AB7
A
604 607Right-handed 310
Helix 17
AB8
A
608 625Right-handed alpha
Helix 18
AB9
A
636 649Right-handed alpha
Helix 19
AC1
A
674 684Right-handed alpha
Helix 20
AC2
A
697 701Right-handed 310
Helix 21
AC3
A
720 729Right-handed alpha
Helix 22
AC4
A
744 769Right-handed alpha
Helix 23
AC5
A
772 794Right-handed alpha
Helix 24
AC6
A
835 840Right-handed alpha
Helix 25
AC7
A
907 911Right-handed 310
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There are 6 sheets in PDB entry 8DVS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
294 296first strand
Strand 2
A
368 371parallel
Strand 3
A
404 405parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
321 322first strand
Strand 2
A
343 344parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
460 462first strand
Strand 2
A
737 742parallel
Strand 3
A
711 715parallel
Strand 4
A
633 634parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
816 819first strand
Strand 2
A
806 810anti-parallel
Strand 3
A
892 896anti-parallel
Strand 4
A
902 904anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
874 878first strand
Strand 2
A
883 887anti-parallel
Strand 3
A
831 833anti-parallel
Strand 4
A
823 825anti-parallel
Strand 5
A
916 917parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
842 846first strand
Strand 2
A
860 864anti-parallel
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