Analysis of interatomic Contacts of Structural Units in PDB entry:
8DVU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8DVU entry

There are 2 chains in PDB entry 8DVU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 240ALA 921
B
 G 6 C 59
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 23 helices in PDB entry 8DVU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
244 251Right-handed alpha
Helix 2
AA2
A
253 257Right-handed 310
Helix 3
AA3
A
269 284Right-handed alpha
Helix 4
AA4
A
299 315Right-handed alpha
Helix 5
AA5
A
333 339Right-handed alpha
Helix 6
AA6
A
347 357Right-handed alpha
Helix 7
AA7
A
362 366Right-handed 310
Helix 8
AA8
A
374 377Right-handed 310
Helix 9
AA9
A
381 395Right-handed alpha
Helix 10
AB1
A
419 434Right-handed alpha
Helix 11
AB2
A
445 450Right-handed alpha
Helix 12
AB3
A
469 491Right-handed alpha
Helix 13
AB4
A
492 496Right-handed 310
Helix 14
AB5
A
506 522Right-handed alpha
Helix 15
AB6
A
527 558Right-handed alpha
Helix 16
AB7
A
559 578Right-handed alpha
Helix 17
AB8
A
580 602Right-handed alpha
Helix 18
AB9
A
608 625Right-handed alpha
Helix 19
AC1
A
636 649Right-handed alpha
Helix 20
AC2
A
674 685Right-handed alpha
Helix 21
AC3
A
720 729Right-handed alpha
Helix 22
AC4
A
746 769Right-handed alpha
Helix 23
AC5
A
772 792Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 8DVU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
260 261first strand
Strand 2
A
404 408parallel
Strand 3
A
368 372parallel
Strand 4
A
293 296parallel
Strand 5
A
343 346parallel
Strand 6
A
321 324parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
457 462first strand
Strand 2
A
737 742parallel
Strand 3
A
714 715parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
658 661first strand
Strand 2
A
693 696parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
816 819first strand
Strand 2
A
806 810anti-parallel
Strand 3
A
892 896anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
832 833first strand
Strand 2
A
823 825anti-parallel
Strand 3
A
916 917parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
842 844first strand
Strand 2
A
861 864anti-parallel
Strand 3
A
872 876anti-parallel
Strand 4
A
885 887anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il