Analysis of interatomic Contacts of Structural Units in PDB entry:
8DW3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8DW3 entry

There are 6 chains in PDB entry 8DW3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 15	SER 169
B	LEU 335	GLY 526
C	GLU 1	GLU 213
D	GLN 1	LYS 228
H	THR 0	SER 219
L	ASP 1	GLU 219

There are 26 helices in PDB entry 8DW3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	16	25	Right-handed alpha
Helix 2	AA2	A	26	35	Right-handed alpha
Helix 3	AA3	A	49	58	Right-handed alpha
Helix 4	AA4	A	59	69	Right-handed alpha
Helix 5	AA5	A	82	91	Right-handed alpha
Helix 6	AA6	A	93	103	Right-handed alpha
Helix 7	AA7	A	115	123	Right-handed alpha
Helix 8	AA8	A	125	135	Right-handed alpha
Helix 9	AA9	A	148	156	Right-handed alpha
Helix 10	AB1	A	158	169	Right-handed alpha
Helix 11	AB2	B	338	343	Right-handed alpha
Helix 12	AB3	B	349	353	Right-handed 310
Helix 13	AB4	B	364	369	Right-handed 310
Helix 14	AB5	B	404	408	Right-handed 310
Helix 15	AB6	B	417	422	Right-handed alpha
Helix 16	AB7	B	502	506	Right-handed 310
Helix 17	AB8	C	121	126	Right-handed alpha
Helix 18	AB9	D	28	32	Right-handed 310
Helix 19	AC1	D	170	172	Right-handed 310
Helix 20	AC2	D	199	203	Right-handed 310
Helix 21	AC3	H	28	32	Right-handed 310
Helix 22	AC4	H	62	65	Right-handed 310
Helix 23	AC5	H	191	193	Right-handed 310
Helix 24	AC6	L	85	89	Right-handed 310
Helix 25	AC7	L	127	134	Right-handed alpha
Helix 26	AC8	L	189	195	Right-handed alpha

There are 23 sheets in PDB entry 8DW3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	354	356	first strand
Strand 2	B	397	402	anti-parallel
Strand 3	B	508	514	anti-parallel
Strand 4	B	431	437	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	452	454	first strand
Strand 2	B	492	494	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	473	474	first strand
Strand 2	B	488	489	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4	5	first strand
Strand 2	C	20	25	anti-parallel
Strand 3	C	71	75	anti-parallel
Strand 4	C	64	68	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	34	39	first strand
Strand 2	C	86	91	anti-parallel
Strand 3	C	97	98	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	34	39	first strand
Strand 2	C	86	91	anti-parallel
Strand 3	C	102	103	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	49	50	first strand
Strand 2	C	54	55	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	114	118	first strand
Strand 2	C	129	137	anti-parallel
Strand 3	C	174	182	anti-parallel
Strand 4	C	159	163	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	145	150	first strand
Strand 2	C	191	197	anti-parallel
Strand 3	C	206	210	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	6	first strand
Strand 2	D	18	25	anti-parallel
Strand 3	D	78	83	anti-parallel
Strand 4	D	68	73	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	12	first strand
Strand 2	D	121	125	parallel
Strand 3	D	92	99	anti-parallel
Strand 4	D	33	39	anti-parallel
Strand 5	D	45	51	anti-parallel
Strand 6	D	58	59	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	134	138	first strand
Strand 2	D	150	157	anti-parallel
Strand 3	D	190	198	anti-parallel
Strand 4	D	177	179	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	134	138	first strand
Strand 2	D	150	157	anti-parallel
Strand 3	D	190	198	anti-parallel
Strand 4	D	183	184	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	165	168	first strand
Strand 2	D	208	214	anti-parallel
Strand 3	D	219	225	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	2	5	first strand
Strand 2	H	18	26	anti-parallel
Strand 3	H	78	83	anti-parallel
Strand 4	H	68	73	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	11	first strand
Strand 2	H	113	116	parallel
Strand 3	H	93	99	anti-parallel
Strand 4	H	33	39	anti-parallel
Strand 5	H	45	51	anti-parallel
Strand 6	H	58	60	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	11	first strand
Strand 2	H	113	116	parallel
Strand 3	H	93	99	anti-parallel
Strand 4	H	108	109	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	124	128	first strand
Strand 2	H	139	149	anti-parallel
Strand 3	H	180	189	anti-parallel
Strand 4	H	167	168	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	155	158	first strand
Strand 2	H	198	204	anti-parallel
Strand 3	H	209	215	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	5	7	first strand
Strand 2	L	19	24	anti-parallel
Strand 3	L	76	81	anti-parallel
Strand 4	L	68	73	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	108	112	parallel
Strand 3	L	91	96	anti-parallel
Strand 4	L	39	44	anti-parallel
Strand 5	L	51	54	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	120	124	first strand
Strand 2	L	135	145	anti-parallel
Strand 3	L	179	188	anti-parallel
Strand 4	L	165	169	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	151	156	first strand
Strand 2	L	197	203	anti-parallel
Strand 3	L	211	216	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8DW3

Analysis of interatomic Contacts of Structural Units in PDB entry:
8DW3