Analysis of interatomic Contacts of Structural Units in PDB entry:
8DWD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8DWD entry

There are 5 chains in PDB entry 8DWD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 8SER 360
B
 A 1 C 5
B
 T 7 C 11
C
 T 12 A 17
C
 G 19 T 22
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 8DWD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 25Right-handed alpha
Helix 2
AA2
A
28 32Right-handed 310
Helix 3
AA3
A
35 46Right-handed alpha
Helix 4
AA4
A
50 65Right-handed alpha
Helix 5
AA5
A
67 73Right-handed alpha
Helix 6
AA6
A
75 84Right-handed alpha
Helix 7
AA7
A
89 105Right-handed alpha
Helix 8
AA8
A
113 119Right-handed alpha
Helix 9
AA9
A
124 136Right-handed alpha
Helix 10
AB1
A
144 155Right-handed alpha
Helix 11
AB2
A
163 178Right-handed alpha
Helix 12
AB3
A
182 197Right-handed alpha
Helix 13
AB4
A
210 213Right-handed 310
Helix 14
AB5
A
214 220Right-handed alpha
Helix 15
AB6
A
221 225Right-handed 310
Helix 16
AB7
A
278 288Right-handed alpha
Helix 17
AB8
A
337 342Right-handed 310
Helix 18
AB9
A
345 360Right-handed alpha
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There are 3 sheets in PDB entry 8DWD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
270 272first strand
Strand 2
A
235 245anti-parallel
Strand 3
A
310 320parallel
Strand 4
A
295 296anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
270 272first strand
Strand 2
A
235 245anti-parallel
Strand 3
A
310 320parallel
Strand 4
A
301 306anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
266 267first strand
Strand 2
A
250 255anti-parallel
Strand 3
A
331 335anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il