Analysis of interatomic Contacts of Structural Units in PDB entry:
8DWE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8DWE entry

There are 6 chains in PDB entry 8DWE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 5	ALA 359
B	A 1	C 5
B	T 7	C 11
C	T 12	A 17
C	G 19	T 22
D	GLU 4	ARG 256

There are 38 helices in PDB entry 8DWE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	9	25	Right-handed alpha
Helix 2	AA2	A	28	32	Right-handed 310
Helix 3	AA3	A	35	46	Right-handed alpha
Helix 4	AA4	A	50	65	Right-handed alpha
Helix 5	AA5	A	67	74	Right-handed alpha
Helix 6	AA6	A	75	84	Right-handed alpha
Helix 7	AA7	A	89	106	Right-handed alpha
Helix 8	AA8	A	113	119	Right-handed alpha
Helix 9	AA9	A	124	137	Right-handed alpha
Helix 10	AB1	A	144	155	Right-handed alpha
Helix 11	AB2	A	163	178	Right-handed alpha
Helix 12	AB3	A	182	197	Right-handed alpha
Helix 13	AB4	A	204	208	Right-handed 310
Helix 14	AB5	A	210	213	Right-handed 310
Helix 15	AB6	A	214	220	Right-handed alpha
Helix 16	AB7	A	221	225	Right-handed 310
Helix 17	AB8	A	277	288	Right-handed alpha
Helix 18	AB9	A	335	340	Right-handed alpha
Helix 19	AC1	A	345	359	Right-handed alpha
Helix 20	AC2	D	9	25	Right-handed alpha
Helix 21	AC3	D	28	32	Right-handed 310
Helix 22	AC4	D	35	46	Right-handed alpha
Helix 23	AC5	D	50	65	Right-handed alpha
Helix 24	AC6	D	67	74	Right-handed alpha
Helix 25	AC7	D	75	84	Right-handed alpha
Helix 26	AC8	D	89	107	Right-handed alpha
Helix 27	AC9	D	113	119	Right-handed alpha
Helix 28	AD1	D	124	136	Right-handed alpha
Helix 29	AD2	D	144	155	Right-handed alpha
Helix 30	AD3	D	163	178	Right-handed alpha
Helix 31	AD4	D	182	197	Right-handed alpha
Helix 32	AD5	D	204	208	Right-handed 310
Helix 33	AD6	D	210	213	Right-handed 310
Helix 34	AD7	D	214	220	Right-handed alpha
Helix 35	AD8	D	221	225	Right-handed 310
Helix 36	AD9	D	278	287	Right-handed alpha
Helix 37	AE1	D	337	342	Right-handed 310
Helix 38	AE2	D	345	360	Right-handed alpha

There are 6 sheets in PDB entry 8DWE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	270	272	first strand
Strand 2	A	235	245	anti-parallel
Strand 3	A	310	323	parallel
Strand 4	A	292	296	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	270	272	first strand
Strand 2	A	235	245	anti-parallel
Strand 3	A	310	323	parallel
Strand 4	A	301	306	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	266	267	first strand
Strand 2	A	251	255	anti-parallel
Strand 3	A	331	334	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	270	272	first strand
Strand 2	D	235	245	anti-parallel
Strand 3	D	310	322	parallel
Strand 4	D	293	296	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	270	272	first strand
Strand 2	D	235	245	anti-parallel
Strand 3	D	310	322	parallel
Strand 4	D	301	306	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	266	267	first strand
Strand 2	D	250	255	anti-parallel
Strand 3	D	331	335	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8DWE

Analysis of interatomic Contacts of Structural Units in PDB entry:
8DWE