Analysis of interatomic Contacts of Structural Units in PDB entry:
8DWH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8DWH entry

There are 4 chains in PDB entry 8DWH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	VAL 5	VAL 246
C	GLU 3	ASN 340
D	GLN 11	PHE 61
R	LYS 25	PHE 278

There are 25 helices in PDB entry 8DWH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	6	32	Right-handed alpha
Helix 2	AA2	B	95	102	Right-handed 310
Helix 3	AA3	B	117	131	Right-handed alpha
Helix 4	AA4	B	132	135	Right-handed 310
Helix 5	AA5	B	145	155	Right-handed alpha
Helix 6	AA6	B	159	163	Right-handed 310
Helix 7	AA7	B	164	170	Right-handed 310
Helix 8	AA8	B	183	204	Right-handed alpha
Helix 9	AA9	B	222	243	Right-handed alpha
Helix 10	AB1	C	4	23	Right-handed alpha
Helix 11	AB2	C	29	34	Right-handed alpha
Helix 12	AB3	D	12	24	Right-handed alpha
Helix 13	AB4	D	29	44	Right-handed alpha
Helix 14	AB5	R	26	55	Right-handed alpha
Helix 15	AB6	R	59	88	Right-handed alpha
Helix 16	AB7	R	94	126	Right-handed alpha
Helix 17	AB8	R	126	132	Right-handed alpha
Helix 18	AB9	R	137	161	Right-handed alpha
Helix 19	AC1	R	172	204	Right-handed alpha
Helix 20	AC2	R	212	229	Right-handed alpha
Helix 21	AC3	R	230	235	Right-handed alpha
Helix 22	AC4	R	237	242	Right-handed alpha
Helix 23	AC5	R	245	252	Right-handed alpha
Helix 24	AC6	R	254	273	Right-handed alpha
Helix 25	AC7	R	274	278	Right-handed 310

There are 9 sheets in PDB entry 8DWH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	33	35	first strand
Strand 2	B	79	83	parallel
Strand 3	B	72	76	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	38	40	first strand
Strand 2	B	105	111	parallel
Strand 3	B	138	144	parallel
Strand 4	B	211	215	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	46	51	first strand
Strand 2	C	335	340	anti-parallel
Strand 3	C	327	331	anti-parallel
Strand 4	C	315	320	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	58	63	first strand
Strand 2	C	69	74	anti-parallel
Strand 3	C	78	83	anti-parallel
Strand 4	C	89	94	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	100	105	first strand
Strand 2	C	111	116	anti-parallel
Strand 3	C	121	125	anti-parallel
Strand 4	C	135	139	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	146	151	first strand
Strand 2	C	156	161	anti-parallel
Strand 3	C	166	170	anti-parallel
Strand 4	C	175	180	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	187	192	first strand
Strand 2	C	198	203	anti-parallel
Strand 3	C	208	212	anti-parallel
Strand 4	C	218	222	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	229	234	first strand
Strand 2	C	240	245	anti-parallel
Strand 3	C	250	254	anti-parallel
Strand 4	C	260	264	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	273	278	first strand
Strand 2	C	284	289	anti-parallel
Strand 3	C	294	298	anti-parallel
Strand 4	C	306	308	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8DWH

Analysis of interatomic Contacts of Structural Units in PDB entry:
8DWH