Analysis of interatomic Contacts of Structural Units in PDB entry:
8DWJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8DWJ entry

There are 3 chains in PDB entry 8DWJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
P
 C 2 A 5
T
 T 1 G 7
A
 SER 3LYS 341
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 8DWJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 17Right-handed alpha
Helix 2
AA2
A
74 82Right-handed alpha
Helix 3
AA3
A
82 97Right-handed alpha
Helix 4
AA4
A
128 130Right-handed 310
Helix 5
AA5
A
134 143Right-handed alpha
Helix 6
AA6
A
146 152Right-handed 310
Helix 7
AA7
A
158 167Right-handed alpha
Helix 8
AA8
A
221 225Right-handed 310
Helix 9
AA9
A
235 240Right-handed alpha
Helix 10
AB1
A
274 287Right-handed alpha
Helix 11
AB2
A
294 297Right-handed 310
Helix 12
AB3
A
303 312Right-handed alpha
Helix 13
AB4
A
314 324Right-handed alpha
Helix 14
AB5
A
329 341Right-handed alpha
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There are 4 sheets in PDB entry 8DWJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
23 27first strand
Strand 2
A
30 35anti-parallel
Strand 3
A
52 55anti-parallel
Strand 4
A
62 65anti-parallel
Strand 5
A
70 73anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
124 126first strand
Strand 2
A
154 156anti-parallel
Strand 3
A
179 185anti-parallel
Strand 4
A
191 198anti-parallel
Strand 5
A
209 211anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
219 220first strand
Strand 2
A
245 248anti-parallel
Strand 3
A
230 233parallel
Strand 4
A
264 266parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
291 292first strand
Strand 2
A
326 327anti-parallel
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