Analysis of interatomic Contacts of Structural Units in PDB entry:
8DWO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8DWO entry

There are 12 chains in PDB entry 8DWO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	TYR 1	THR 400
B	ASP 1	HIS 346
F	TYR 1	THR 400
G	ASP 1	HIS 346
H	VAL 1	SER 113
J	TYR 1	THR 400
K	ASP 1	HIS 346
L	ASP 1	LYS 107
S	VAL 1	SER 113
T	ASP 1	LYS 107
U	VAL 1	SER 113
V	ASP 1	LYS 107

There are 24 helices in PDB entry 8DWO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	112	116	Right-handed 310
Helix 2	AA2	A	239	248	Right-handed alpha
Helix 3	AA3	A	284	288	Right-handed 310
Helix 4	AA4	B	2	10	Right-handed alpha
Helix 5	AA5	B	219	221	Right-handed 310
Helix 6	AA6	F	112	116	Right-handed 310
Helix 7	AA7	F	239	248	Right-handed alpha
Helix 8	AA8	F	256	260	Right-handed 310
Helix 9	AA9	F	284	288	Right-handed 310
Helix 10	AB1	F	290	294	Right-handed 310
Helix 11	AB2	G	2	10	Right-handed alpha
Helix 12	AB3	G	219	223	Right-handed 310
Helix 13	AB4	H	83	87	Right-handed 310
Helix 14	AB5	J	112	116	Right-handed 310
Helix 15	AB6	J	239	248	Right-handed alpha
Helix 16	AB7	J	284	288	Right-handed 310
Helix 17	AB8	J	290	294	Right-handed 310
Helix 18	AB9	K	2	9	Right-handed alpha
Helix 19	AC1	K	219	223	Right-handed 310
Helix 20	AC2	L	79	83	Right-handed 310
Helix 21	AC3	S	61	64	Right-handed 310
Helix 22	AC4	S	83	87	Right-handed 310
Helix 23	AC5	T	79	83	Right-handed 310
Helix 24	AC6	V	79	83	Right-handed 310

There are 66 sheets in PDB entry 8DWO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6, AF7, AF8, AF9, AG1, AG2, AG3, AG4, AG5, AG6, AG7, AG8, AG9, AH1, AH2, AH3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2	8	first strand
Strand 2	A	276	282	anti-parallel
Strand 3	A	160	164	anti-parallel
Strand 4	A	155	157	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	14	19	first strand
Strand 2	A	27	48	anti-parallel
Strand 3	A	119	137	anti-parallel
Strand 4	A	177	181	anti-parallel
Strand 5	A	184	186	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	140	148	first strand
Strand 2	A	119	137	anti-parallel
Strand 3	A	27	48	anti-parallel
Strand 4	A	204	206	anti-parallel
Strand 5	A	214	216	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	51	54	first strand
Strand 2	A	107	110	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	221	222	first strand
Strand 2	A	234	235	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	298	307	first strand
Strand 2	A	315	322	anti-parallel
Strand 3	A	353	359	anti-parallel
Strand 4	A	338	340	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	344	347	first strand
Strand 2	A	327	332	anti-parallel
Strand 3	A	367	370	anti-parallel
Strand 4	A	373	376	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	17	19	first strand
Strand 2	B	27	29	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	33	37	first strand
Strand 2	B	44	53	anti-parallel
Strand 3	B	64	69	anti-parallel
Strand 4	B	72	77	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	33	37	first strand
Strand 2	B	44	53	anti-parallel
Strand 3	B	90	102	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	81	84	first strand
Strand 2	B	109	113	anti-parallel
Strand 3	B	121	124	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	153	first strand
Strand 2	B	258	265	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	163	166	first strand
Strand 2	B	250	253	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	172	174	first strand
Strand 2	B	223	227	anti-parallel
Strand 3	B	196	199	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	178	180	first strand
Strand 2	B	185	187	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	272	274	first strand
Strand 2	B	280	284	anti-parallel
Strand 3	B	312	316	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	304	308	first strand
Strand 2	B	290	296	anti-parallel
Strand 3	B	323	327	anti-parallel
Strand 4	B	333	335	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	2	8	first strand
Strand 2	F	276	282	anti-parallel
Strand 3	F	160	164	anti-parallel
Strand 4	F	150	157	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	14	19	first strand
Strand 2	F	27	39	anti-parallel
Strand 3	F	128	137	anti-parallel
Strand 4	F	143	148	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	14	19	first strand
Strand 2	F	27	39	anti-parallel
Strand 3	F	269	270	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	44	48	first strand
Strand 2	F	119	123	anti-parallel
Strand 3	F	177	181	anti-parallel
Strand 4	F	184	186	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	51	54	first strand
Strand 2	F	107	110	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	221	222	first strand
Strand 2	F	234	235	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	297	307	first strand
Strand 2	F	315	323	anti-parallel
Strand 3	F	352	358	anti-parallel
Strand 4	F	339	340	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	344	347	first strand
Strand 2	F	327	332	anti-parallel
Strand 3	F	366	370	anti-parallel
Strand 4	F	374	377	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	19	22	first strand
Strand 2	G	25	27	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	73	77	first strand
Strand 2	G	64	68	anti-parallel
Strand 3	G	44	53	anti-parallel
Strand 4	G	90	102	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	81	84	first strand
Strand 2	G	109	113	anti-parallel
Strand 3	G	121	124	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	146	153	first strand
Strand 2	G	258	265	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	234	235	first strand
Strand 2	G	163	167	anti-parallel
Strand 3	G	250	253	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	172	174	first strand
Strand 2	G	224	227	anti-parallel
Strand 3	G	196	198	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	178	180	first strand
Strand 2	G	185	187	anti-parallel
Strand 3	G	213	214	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	272	274	first strand
Strand 2	G	280	284	anti-parallel
Strand 3	G	312	316	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	304	308	first strand
Strand 2	G	290	296	anti-parallel
Strand 3	G	323	327	anti-parallel
Strand 4	G	333	335	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	6	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	77	82	anti-parallel
Strand 4	H	68	72	anti-parallel

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There are 6 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	107	111	parallel
Strand 3	H	88	95	anti-parallel
Strand 4	H	33	39	anti-parallel
Strand 5	H	45	52	anti-parallel
Strand 6	H	57	59	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	107	111	parallel
Strand 3	H	88	95	anti-parallel
Strand 4	H	102	103	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	2	8	first strand
Strand 2	J	276	282	anti-parallel
Strand 3	J	160	164	anti-parallel
Strand 4	J	150	157	anti-parallel

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There are 5 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	14	21	first strand
Strand 2	J	24	48	anti-parallel
Strand 3	J	119	137	anti-parallel
Strand 4	J	177	181	anti-parallel
Strand 5	J	184	186	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	143	148	first strand
Strand 2	J	119	137	anti-parallel
Strand 3	J	24	48	anti-parallel
Strand 4	J	205	206	anti-parallel

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There are 3 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	51	54	first strand
Strand 2	J	103	110	anti-parallel
Strand 3	J	77	80	anti-parallel

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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	221	222	first strand
Strand 2	J	234	235	anti-parallel

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There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	297	307	first strand
Strand 2	J	315	323	anti-parallel
Strand 3	J	352	359	anti-parallel
Strand 4	J	338	340	anti-parallel

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There are 4 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	344	347	first strand
Strand 2	J	327	332	anti-parallel
Strand 3	J	367	370	anti-parallel
Strand 4	J	374	376	anti-parallel

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There are 2 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	17	22	first strand
Strand 2	K	25	29	anti-parallel

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There are 4 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	34	37	first strand
Strand 2	K	44	54	anti-parallel
Strand 3	K	64	68	anti-parallel
Strand 4	K	73	77	anti-parallel

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There are 6 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	34	37	first strand
Strand 2	K	44	54	anti-parallel
Strand 3	K	88	102	anti-parallel
Strand 4	K	82	84	anti-parallel
Strand 5	K	109	112	anti-parallel
Strand 6	K	121	124	anti-parallel

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There are 2 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	146	153	first strand
Strand 2	K	258	265	anti-parallel

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There are 2 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	163	164	first strand
Strand 2	K	252	253	anti-parallel

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There are 2 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	166	167	first strand
Strand 2	K	234	235	anti-parallel

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There are 3 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	172	174	first strand
Strand 2	K	224	227	anti-parallel
Strand 3	K	195	198	anti-parallel

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There are 3 strands in AF7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	178	180	first strand
Strand 2	K	185	187	anti-parallel
Strand 3	K	212	214	anti-parallel

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There are 3 strands in AF8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	272	274	first strand
Strand 2	K	280	284	anti-parallel
Strand 3	K	312	316	anti-parallel

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There are 4 strands in AF9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	304	308	first strand
Strand 2	K	290	296	anti-parallel
Strand 3	K	323	327	anti-parallel
Strand 4	K	333	335	anti-parallel

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There are 4 strands in AG1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	7	first strand
Strand 2	L	19	25	anti-parallel
Strand 3	L	70	75	anti-parallel
Strand 4	L	62	67	anti-parallel

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There are 6 strands in AG2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	12	first strand
Strand 2	L	102	105	parallel
Strand 3	L	84	90	anti-parallel
Strand 4	L	33	38	anti-parallel
Strand 5	L	44	49	anti-parallel
Strand 6	L	53	54	anti-parallel

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There are 4 strands in AG3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	3	6	first strand
Strand 2	S	18	25	anti-parallel
Strand 3	S	77	82	anti-parallel
Strand 4	S	67	72	anti-parallel

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There are 6 strands in AG4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	10	12	first strand
Strand 2	S	107	111	parallel
Strand 3	S	88	96	anti-parallel
Strand 4	S	32	39	anti-parallel
Strand 5	S	45	52	anti-parallel
Strand 6	S	56	59	anti-parallel

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There are 4 strands in AG5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	10	12	first strand
Strand 2	S	107	111	parallel
Strand 3	S	88	96	anti-parallel
Strand 4	S	102	103	anti-parallel

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There are 4 strands in AG6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	4	7	first strand
Strand 2	T	19	25	anti-parallel
Strand 3	T	70	75	anti-parallel
Strand 4	T	62	67	anti-parallel

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There are 6 strands in AG7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	10	12	first strand
Strand 2	T	102	105	parallel
Strand 3	T	84	90	anti-parallel
Strand 4	T	33	38	anti-parallel
Strand 5	T	45	49	anti-parallel
Strand 6	T	53	54	anti-parallel

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There are 4 strands in AG8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	3	6	first strand
Strand 2	U	18	25	anti-parallel
Strand 3	U	77	82	anti-parallel
Strand 4	U	67	72	anti-parallel

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There are 6 strands in AG9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	10	12	first strand
Strand 2	U	107	111	parallel
Strand 3	U	88	96	anti-parallel
Strand 4	U	32	39	anti-parallel
Strand 5	U	45	52	anti-parallel
Strand 6	U	57	59	anti-parallel

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There are 4 strands in AH1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	10	12	first strand
Strand 2	U	107	111	parallel
Strand 3	U	88	96	anti-parallel
Strand 4	U	102	103	anti-parallel

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There are 4 strands in AH2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	4	7	first strand
Strand 2	V	19	25	anti-parallel
Strand 3	V	70	75	anti-parallel
Strand 4	V	62	67	anti-parallel

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There are 5 strands in AH3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	10	13	first strand
Strand 2	V	102	106	parallel
Strand 3	V	84	90	anti-parallel
Strand 4	V	33	38	anti-parallel
Strand 5	V	45	49	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8DWO

Analysis of interatomic Contacts of Structural Units in PDB entry:
8DWO