Analysis of interatomic Contacts of Structural Units in PDB entry:
8DWU

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8DWU entry

There are 9 chains in PDB entry 8DWU (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 14	PRO 264
B	SER 14	ALA 357
C	GLY 16	ALA 357
D	PRO 17	GLN 360
E	PRO 17	GLN 360
F	PRO 17	SER 358
J	ARG 185	SER 358
H	MET 176	ALA 357
I	MET 176	SER 358

There are110 helices in PDB entry 8DWU. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	41	44	Right-handed 310
Helix 2	AA2	A	139	143	Right-handed alpha
Helix 3	AA3	A	185	192	Right-handed alpha
Helix 4	AA4	A	215	222	Right-handed alpha
Helix 5	AA5	A	222	231	Right-handed alpha
Helix 6	AA6	A	247	261	Right-handed alpha
Helix 7	AA7	B	41	44	Right-handed 310
Helix 8	AA8	B	139	144	Right-handed alpha
Helix 9	AA9	B	185	193	Right-handed alpha
Helix 10	AB1	B	215	222	Right-handed alpha
Helix 11	AB2	B	222	231	Right-handed alpha
Helix 12	AB3	B	247	261	Right-handed alpha
Helix 13	AB4	B	269	280	Right-handed alpha
Helix 14	AB5	B	282	296	Right-handed alpha
Helix 15	AB6	B	301	312	Right-handed alpha
Helix 16	AB7	B	315	328	Right-handed alpha
Helix 17	AB8	B	328	333	Right-handed alpha
Helix 18	AB9	B	335	345	Right-handed alpha
Helix 19	AC1	B	345	357	Right-handed alpha
Helix 20	AC2	C	40	44	Right-handed 310
Helix 21	AC3	C	139	144	Right-handed alpha
Helix 22	AC4	C	150	154	Right-handed 310
Helix 23	AC5	C	185	191	Right-handed alpha
Helix 24	AC6	C	215	222	Right-handed alpha
Helix 25	AC7	C	222	231	Right-handed alpha
Helix 26	AC8	C	247	261	Right-handed alpha
Helix 27	AC9	C	263	267	Right-handed 310
Helix 28	AD1	C	269	280	Right-handed alpha
Helix 29	AD2	C	282	295	Right-handed alpha
Helix 30	AD3	C	301	312	Right-handed alpha
Helix 31	AD4	C	315	328	Right-handed alpha
Helix 32	AD5	C	328	333	Right-handed alpha
Helix 33	AD6	C	335	345	Right-handed alpha
Helix 34	AD7	C	345	357	Right-handed alpha
Helix 35	AD8	D	40	44	Right-handed 310
Helix 36	AD9	D	138	144	Right-handed alpha
Helix 37	AE1	D	150	154	Right-handed 310
Helix 38	AE2	D	185	192	Right-handed alpha
Helix 39	AE3	D	215	222	Right-handed alpha
Helix 40	AE4	D	222	231	Right-handed alpha
Helix 41	AE5	D	247	258	Right-handed alpha
Helix 42	AE6	D	269	280	Right-handed alpha
Helix 43	AE7	D	282	296	Right-handed alpha
Helix 44	AE8	D	301	312	Right-handed alpha
Helix 45	AE9	D	315	328	Right-handed alpha
Helix 46	AF1	D	335	345	Right-handed alpha
Helix 47	AF2	D	345	360	Right-handed alpha
Helix 48	AF3	E	41	44	Right-handed 310
Helix 49	AF4	E	77	81	Right-handed 310
Helix 50	AF5	E	139	144	Right-handed alpha
Helix 51	AF6	E	145	148	Right-handed 310
Helix 52	AF7	E	186	196	Right-handed alpha
Helix 53	AF8	E	215	222	Right-handed alpha
Helix 54	AF9	E	222	231	Right-handed alpha
Helix 55	AG1	E	247	258	Right-handed alpha
Helix 56	AG2	E	269	280	Right-handed alpha
Helix 57	AG3	E	282	296	Right-handed alpha
Helix 58	AG4	E	301	312	Right-handed alpha
Helix 59	AG5	E	315	328	Right-handed alpha
Helix 60	AG6	E	328	333	Right-handed alpha
Helix 61	AG7	E	335	345	Right-handed alpha
Helix 62	AG8	E	346	360	Right-handed alpha
Helix 63	AG9	F	40	45	Right-handed alpha
Helix 64	AH1	F	77	81	Right-handed 310
Helix 65	AH2	F	138	144	Right-handed alpha
Helix 66	AH3	F	145	148	Right-handed 310
Helix 67	AH4	F	150	152	Right-handed 310
Helix 68	AH5	F	186	192	Right-handed alpha
Helix 69	AH6	F	215	222	Right-handed alpha
Helix 70	AH7	F	222	231	Right-handed alpha
Helix 71	AH8	F	247	258	Right-handed alpha
Helix 72	AH9	F	269	280	Right-handed alpha
Helix 73	AI1	F	282	295	Right-handed alpha
Helix 74	AI2	F	301	312	Right-handed alpha
Helix 75	AI3	F	315	328	Right-handed alpha
Helix 76	AI4	F	328	333	Right-handed alpha
Helix 77	AI5	F	335	345	Right-handed alpha
Helix 78	AI6	F	345	358	Right-handed alpha
Helix 79	AI7	J	187	192	Right-handed alpha
Helix 80	AI8	J	215	222	Right-handed alpha
Helix 81	AI9	J	222	231	Right-handed alpha
Helix 82	AJ1	J	247	258	Right-handed alpha
Helix 83	AJ2	J	269	280	Right-handed alpha
Helix 84	AJ3	J	282	296	Right-handed alpha
Helix 85	AJ4	J	301	312	Right-handed alpha
Helix 86	AJ5	J	315	328	Right-handed alpha
Helix 87	AJ6	J	331	334	Right-handed 310
Helix 88	AJ7	J	335	345	Right-handed alpha
Helix 89	AJ8	J	345	357	Right-handed alpha
Helix 90	AJ9	H	186	192	Right-handed alpha
Helix 91	AK1	H	215	222	Right-handed alpha
Helix 92	AK2	H	222	231	Right-handed alpha
Helix 93	AK3	H	247	258	Right-handed alpha
Helix 94	AK4	H	269	280	Right-handed alpha
Helix 95	AK5	H	282	296	Right-handed alpha
Helix 96	AK6	H	301	312	Right-handed alpha
Helix 97	AK7	H	315	328	Right-handed alpha
Helix 98	AK8	H	335	345	Right-handed alpha
Helix 99	AK9	H	345	357	Right-handed alpha
Helix 100	AL1	I	186	192	Right-handed alpha
Helix 101	AL2	I	215	222	Right-handed alpha
Helix 102	AL3	I	222	231	Right-handed alpha
Helix 103	AL4	I	247	261	Right-handed alpha
Helix 104	AL5	I	269	280	Right-handed alpha
Helix 105	AL6	I	282	295	Right-handed alpha
Helix 106	AL7	I	301	312	Right-handed alpha
Helix 107	AL8	I	315	328	Right-handed alpha
Helix 108	AL9	I	328	333	Right-handed alpha
Helix 109	AM1	I	335	345	Right-handed alpha
Helix 110	AM2	I	345	358	Right-handed alpha

There are 25 sheets in PDB entry 8DWU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	99	101	first strand
Strand 2	A	162	164	anti-parallel
Strand 3	A	29	31	anti-parallel
Strand 4	C	29	38	anti-parallel
Strand 5	C	155	164	anti-parallel
Strand 6	C	103	106	anti-parallel
Strand 7	C	117	118	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	99	101	first strand
Strand 2	A	162	164	anti-parallel
Strand 3	A	29	31	anti-parallel
Strand 4	C	29	38	anti-parallel
Strand 5	C	155	164	anti-parallel
Strand 6	C	98	100	anti-parallel
Strand 7	C	123	125	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	34	39	first strand
Strand 2	A	154	159	anti-parallel
Strand 3	A	103	107	anti-parallel
Strand 4	A	117	118	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	52	53	first strand
Strand 2	A	66	72	anti-parallel
Strand 3	A	57	58	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	52	53	first strand
Strand 2	A	66	72	anti-parallel
Strand 3	A	83	92	anti-parallel
Strand 4	A	130	138	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	202	206	first strand
Strand 2	A	209	213	anti-parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	123	125	first strand
Strand 2	B	98	101	anti-parallel
Strand 3	B	162	164	anti-parallel
Strand 4	B	29	31	anti-parallel
Strand 5	E	29	39	anti-parallel
Strand 6	E	154	164	anti-parallel
Strand 7	E	98	106	anti-parallel
Strand 8	E	117	118	anti-parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	123	125	first strand
Strand 2	B	98	101	anti-parallel
Strand 3	B	162	164	anti-parallel
Strand 4	B	29	31	anti-parallel
Strand 5	E	29	39	anti-parallel
Strand 6	E	154	164	anti-parallel
Strand 7	E	98	106	anti-parallel
Strand 8	E	123	125	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	34	39	first strand
Strand 2	B	154	159	anti-parallel
Strand 3	B	103	106	anti-parallel
Strand 4	B	117	118	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	52	53	first strand
Strand 2	B	66	72	anti-parallel
Strand 3	B	83	92	anti-parallel
Strand 4	B	130	138	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	202	206	first strand
Strand 2	B	209	213	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	52	53	first strand
Strand 2	C	66	72	anti-parallel
Strand 3	C	83	92	anti-parallel
Strand 4	C	130	138	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	202	206	first strand
Strand 2	C	209	213	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	29	38	first strand
Strand 2	D	155	164	anti-parallel
Strand 3	D	101	106	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	69	71	first strand
Strand 2	D	86	89	anti-parallel
Strand 3	D	130	133	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	202	206	first strand
Strand 2	D	209	213	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	66	72	first strand
Strand 2	E	83	92	anti-parallel
Strand 3	E	130	138	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	202	206	first strand
Strand 2	E	209	213	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	29	39	first strand
Strand 2	F	154	164	anti-parallel
Strand 3	F	103	107	anti-parallel
Strand 4	F	117	118	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	29	39	first strand
Strand 2	F	154	164	anti-parallel
Strand 3	F	98	100	anti-parallel
Strand 4	F	123	125	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	57	58	first strand
Strand 2	F	66	69	anti-parallel
Strand 3	F	86	92	anti-parallel
Strand 4	F	130	133	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	202	206	first strand
Strand 2	F	209	213	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	202	206	first strand
Strand 2	J	209	213	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	202	206	first strand
Strand 2	H	209	213	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	202	206	first strand
Strand 2	I	209	213	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8DWU

Analysis of interatomic Contacts of Structural Units in PDB entry:
8DWU