Analysis of interatomic Contacts of Structural Units in PDB entry:
8DWV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8DWV entry

There are 6 chains in PDB entry 8DWV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 15	PRO 367
B	GLU 20	GLY 365
E	SER 15	PHE 363
F	VAL 18	LEU 364
G	GLU 20	LEU 364
H	VAL 18	CYS 361

There are 96 helices in PDB entry 8DWV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	40	44	Right-handed 310
Helix 2	AA2	A	139	144	Right-handed alpha
Helix 3	AA3	A	145	148	Right-handed 310
Helix 4	AA4	A	150	154	Right-handed 310
Helix 5	AA5	A	185	197	Right-handed alpha
Helix 6	AA6	A	214	222	Right-handed alpha
Helix 7	AA7	A	222	231	Right-handed alpha
Helix 8	AA8	A	232	237	Right-handed alpha
Helix 9	AA9	A	247	261	Right-handed alpha
Helix 10	AB1	A	266	270	Right-handed 310
Helix 11	AB2	A	271	281	Right-handed alpha
Helix 12	AB3	A	282	295	Right-handed alpha
Helix 13	AB4	A	301	313	Right-handed alpha
Helix 14	AB5	A	314	333	Right-handed alpha
Helix 15	AB6	A	335	345	Right-handed alpha
Helix 16	AB7	A	345	360	Right-handed alpha
Helix 17	AB8	B	43	48	Right-handed alpha
Helix 18	AB9	B	60	64	Right-handed 310
Helix 19	AC1	B	78	81	Right-handed 310
Helix 20	AC2	B	139	144	Right-handed alpha
Helix 21	AC3	B	145	148	Right-handed 310
Helix 22	AC4	B	185	197	Right-handed alpha
Helix 23	AC5	B	214	222	Right-handed alpha
Helix 24	AC6	B	222	229	Right-handed alpha
Helix 25	AC7	B	247	261	Right-handed alpha
Helix 26	AC8	B	269	281	Right-handed alpha
Helix 27	AC9	B	282	295	Right-handed alpha
Helix 28	AD1	B	301	312	Right-handed alpha
Helix 29	AD2	B	314	328	Right-handed alpha
Helix 30	AD3	B	328	333	Right-handed alpha
Helix 31	AD4	B	335	345	Right-handed alpha
Helix 32	AD5	B	345	358	Right-handed alpha
Helix 33	AD6	E	77	81	Right-handed 310
Helix 34	AD7	E	139	144	Right-handed alpha
Helix 35	AD8	E	145	148	Right-handed 310
Helix 36	AD9	E	150	154	Right-handed 310
Helix 37	AE1	E	187	192	Right-handed alpha
Helix 38	AE2	E	215	222	Right-handed alpha
Helix 39	AE3	E	222	231	Right-handed alpha
Helix 40	AE4	E	247	255	Right-handed alpha
Helix 41	AE5	E	269	280	Right-handed alpha
Helix 42	AE6	E	282	295	Right-handed alpha
Helix 43	AE7	E	301	312	Right-handed alpha
Helix 44	AE8	E	315	328	Right-handed alpha
Helix 45	AE9	E	328	333	Right-handed alpha
Helix 46	AF1	E	335	345	Right-handed alpha
Helix 47	AF2	E	345	360	Right-handed alpha
Helix 48	AF3	F	40	44	Right-handed 310
Helix 49	AF4	F	60	64	Right-handed 310
Helix 50	AF5	F	78	82	Right-handed 310
Helix 51	AF6	F	138	144	Right-handed alpha
Helix 52	AF7	F	150	154	Right-handed 310
Helix 53	AF8	F	185	197	Right-handed alpha
Helix 54	AF9	F	215	222	Right-handed alpha
Helix 55	AG1	F	222	228	Right-handed alpha
Helix 56	AG2	F	233	238	Right-handed alpha
Helix 57	AG3	F	247	261	Right-handed alpha
Helix 58	AG4	F	266	268	Right-handed 310
Helix 59	AG5	F	269	280	Right-handed alpha
Helix 60	AG6	F	284	295	Right-handed alpha
Helix 61	AG7	F	301	312	Right-handed alpha
Helix 62	AG8	F	315	333	Right-handed alpha
Helix 63	AG9	F	335	345	Right-handed alpha
Helix 64	AH1	F	345	358	Right-handed alpha
Helix 65	AH2	G	40	45	Right-handed alpha
Helix 66	AH3	G	77	83	Right-handed alpha
Helix 67	AH4	G	138	144	Right-handed alpha
Helix 68	AH5	G	150	154	Right-handed 310
Helix 69	AH6	G	185	197	Right-handed alpha
Helix 70	AH7	G	215	222	Right-handed alpha
Helix 71	AH8	G	222	230	Right-handed alpha
Helix 72	AH9	G	234	240	Right-handed alpha
Helix 73	AI1	G	247	260	Right-handed alpha
Helix 74	AI2	G	266	268	Right-handed 310
Helix 75	AI3	G	269	281	Right-handed alpha
Helix 76	AI4	G	282	295	Right-handed alpha
Helix 77	AI5	G	301	312	Right-handed alpha
Helix 78	AI6	G	314	333	Right-handed alpha
Helix 79	AI7	G	335	345	Right-handed alpha
Helix 80	AI8	G	345	360	Right-handed alpha
Helix 81	AI9	H	40	44	Right-handed 310
Helix 82	AJ1	H	139	144	Right-handed alpha
Helix 83	AJ2	H	150	154	Right-handed 310
Helix 84	AJ3	H	185	192	Right-handed alpha
Helix 85	AJ4	H	192	197	Right-handed alpha
Helix 86	AJ5	H	214	221	Right-handed alpha
Helix 87	AJ6	H	222	231	Right-handed alpha
Helix 88	AJ7	H	247	261	Right-handed alpha
Helix 89	AJ8	H	266	268	Right-handed 310
Helix 90	AJ9	H	269	281	Right-handed alpha
Helix 91	AK1	H	282	295	Right-handed alpha
Helix 92	AK2	H	301	313	Right-handed alpha
Helix 93	AK3	H	314	328	Right-handed alpha
Helix 94	AK4	H	328	333	Right-handed alpha
Helix 95	AK5	H	335	345	Right-handed alpha
Helix 96	AK6	H	345	359	Right-handed alpha

There are 24 sheets in PDB entry 8DWV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	38	first strand
Strand 2	A	155	164	anti-parallel
Strand 3	A	102	107	anti-parallel
Strand 4	A	117	118	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	66	72	first strand
Strand 2	A	83	92	anti-parallel
Strand 3	A	130	131	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	66	72	first strand
Strand 2	A	83	92	anti-parallel
Strand 3	A	137	138	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	98	100	first strand
Strand 2	A	123	125	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	209	213	first strand
Strand 2	A	202	206	anti-parallel
Strand 3	A	242	243	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	57	59	first strand
Strand 2	B	65	67	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	83	86	first strand
Strand 2	B	133	138	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	209	213	first strand
Strand 2	B	202	206	anti-parallel
Strand 3	B	241	242	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	29	38	first strand
Strand 2	E	155	164	anti-parallel
Strand 3	E	102	107	anti-parallel
Strand 4	E	113	118	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	66	72	first strand
Strand 2	E	83	92	anti-parallel
Strand 3	E	137	138	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	99	100	first strand
Strand 2	E	123	124	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	202	206	first strand
Strand 2	E	209	213	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	30	31	first strand
Strand 2	F	162	164	anti-parallel
Strand 3	F	99	101	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	68	72	first strand
Strand 2	F	85	89	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	104	105	first strand
Strand 2	F	158	159	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	205	206	first strand
Strand 2	F	209	210	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	29	38	first strand
Strand 2	G	155	164	anti-parallel
Strand 3	G	99	105	anti-parallel
Strand 4	G	123	124	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	52	53	first strand
Strand 2	G	66	72	anti-parallel
Strand 3	G	85	92	anti-parallel
Strand 4	G	130	133	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	204	206	first strand
Strand 2	G	209	211	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	29	35	first strand
Strand 2	H	158	164	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	67	71	first strand
Strand 2	H	83	90	anti-parallel
Strand 3	H	130	138	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	99	100	first strand
Strand 2	H	123	124	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	103	107	first strand
Strand 2	H	113	118	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	205	206	first strand
Strand 2	H	209	210	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8DWV

Analysis of interatomic Contacts of Structural Units in PDB entry:
8DWV