Analysis of interatomic Contacts of Structural Units in PDB entry:
8DX0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8DX0 entry

There are 2 chains in PDB entry 8DX0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 210PRO 358
B
 THR 210PRO 358
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 8DX0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
215 227Right-handed alpha
Helix 2
AA2
A
228 231Right-handed 310
Helix 3
AA3
A
250 269Right-handed alpha
Helix 4
AA4
A
297 302Right-handed alpha
Helix 5
AA5
A
308 312Right-handed 310
Helix 6
AA6
A
325 336Right-handed alpha
Helix 7
AA7
B
215 227Right-handed alpha
Helix 8
AA8
B
228 231Right-handed 310
Helix 9
AA9
B
250 269Right-handed alpha
Helix 10
AB1
B
297 302Right-handed alpha
Helix 11
AB2
B
308 312Right-handed 310
Helix 12
AB3
B
325 336Right-handed alpha
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There are 4 sheets in PDB entry 8DX0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
212 214first strand
Strand 2
A
246 248anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
236 241first strand
Strand 2
A
274 281parallel
Strand 3
A
285 292anti-parallel
Strand 4
A
348 355anti-parallel
Strand 5
A
339 345anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
213 214first strand
Strand 2
B
246 247anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
236 241first strand
Strand 2
B
274 281parallel
Strand 3
B
285 292anti-parallel
Strand 4
B
348 355anti-parallel
Strand 5
B
339 345anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il