Analysis of interatomic Contacts of Structural Units in PDB entry:
8DXO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8DXO entry

There are 7 chains in PDB entry 8DXO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 16	LEU 405
B	ALA 16	LEU 405
C	ALA 16	LEU 405
D	PRO 15	LEU 405
E	ALA 16	LEU 405
F	ALA 16	LEU 405
G	ALA 16	LEU 405

There are 96 helices in PDB entry 8DXO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	22	48	Right-handed alpha
Helix 2	AA2	A	104	117	Right-handed alpha
Helix 3	AA3	A	121	126	Right-handed alpha
Helix 4	AA4	A	126	148	Right-handed alpha
Helix 5	AA5	A	152	168	Right-handed alpha
Helix 6	AA6	A	169	176	Right-handed alpha
Helix 7	AA7	A	235	253	Right-handed alpha
Helix 8	AA8	A	259	283	Right-handed alpha
Helix 9	AA9	A	313	342	Right-handed alpha
Helix 10	AB1	A	352	359	Right-handed alpha
Helix 11	AB2	A	368	381	Right-handed alpha
Helix 12	AB3	A	383	393	Right-handed alpha
Helix 13	AB4	A	393	405	Right-handed alpha
Helix 14	AB5	B	17	22	Right-handed 310
Helix 15	AB6	B	23	48	Right-handed alpha
Helix 16	AB7	B	104	120	Right-handed alpha
Helix 17	AB8	B	121	126	Right-handed alpha
Helix 18	AB9	B	126	143	Right-handed alpha
Helix 19	AC1	B	143	148	Right-handed alpha
Helix 20	AC2	B	152	165	Right-handed alpha
Helix 21	AC3	B	168	175	Right-handed alpha
Helix 22	AC4	B	232	252	Right-handed alpha
Helix 23	AC5	B	259	283	Right-handed alpha
Helix 24	AC6	B	312	341	Right-handed alpha
Helix 25	AC7	B	351	359	Right-handed alpha
Helix 26	AC8	B	367	381	Right-handed alpha
Helix 27	AC9	B	383	391	Right-handed alpha
Helix 28	AD1	B	393	405	Right-handed alpha
Helix 29	AD2	C	22	47	Right-handed alpha
Helix 30	AD3	C	104	119	Right-handed alpha
Helix 31	AD4	C	121	143	Right-handed alpha
Helix 32	AD5	C	152	167	Right-handed alpha
Helix 33	AD6	C	168	175	Right-handed alpha
Helix 34	AD7	C	232	252	Right-handed alpha
Helix 35	AD8	C	258	283	Right-handed alpha
Helix 36	AD9	C	284	287	Right-handed 310
Helix 37	AE1	C	313	343	Right-handed alpha
Helix 38	AE2	C	352	359	Right-handed alpha
Helix 39	AE3	C	367	379	Right-handed alpha
Helix 40	AE4	C	383	390	Right-handed alpha
Helix 41	AE5	C	393	405	Right-handed alpha
Helix 42	AE6	D	22	47	Right-handed alpha
Helix 43	AE7	D	106	120	Right-handed alpha
Helix 44	AE8	D	121	126	Right-handed alpha
Helix 45	AE9	D	126	142	Right-handed alpha
Helix 46	AF1	D	148	167	Right-handed alpha
Helix 47	AF2	D	168	177	Right-handed alpha
Helix 48	AF3	D	235	252	Right-handed alpha
Helix 49	AF4	D	259	282	Right-handed alpha
Helix 50	AF5	D	313	341	Right-handed alpha
Helix 51	AF6	D	352	359	Right-handed alpha
Helix 52	AF7	D	367	380	Right-handed alpha
Helix 53	AF8	D	383	390	Right-handed alpha
Helix 54	AF9	D	393	405	Right-handed alpha
Helix 55	AG1	E	17	21	Right-handed 310
Helix 56	AG2	E	22	50	Right-handed alpha
Helix 57	AG3	E	104	119	Right-handed alpha
Helix 58	AG4	E	121	126	Right-handed alpha
Helix 59	AG5	E	127	142	Right-handed alpha
Helix 60	AG6	E	152	167	Right-handed alpha
Helix 61	AG7	E	168	176	Right-handed alpha
Helix 62	AG8	E	232	253	Right-handed alpha
Helix 63	AG9	E	259	284	Right-handed alpha
Helix 64	AH1	E	285	287	Right-handed 310
Helix 65	AH2	E	312	344	Right-handed alpha
Helix 66	AH3	E	352	359	Right-handed alpha
Helix 67	AH4	E	367	381	Right-handed alpha
Helix 68	AH5	E	383	391	Right-handed alpha
Helix 69	AH6	E	393	405	Right-handed alpha
Helix 70	AH7	F	23	49	Right-handed alpha
Helix 71	AH8	F	104	119	Right-handed alpha
Helix 72	AH9	F	121	126	Right-handed alpha
Helix 73	AI1	F	127	143	Right-handed alpha
Helix 74	AI2	F	152	167	Right-handed alpha
Helix 75	AI3	F	168	177	Right-handed alpha
Helix 76	AI4	F	232	253	Right-handed alpha
Helix 77	AI5	F	256	283	Right-handed alpha
Helix 78	AI6	F	312	342	Right-handed alpha
Helix 79	AI7	F	351	359	Right-handed alpha
Helix 80	AI8	F	367	379	Right-handed alpha
Helix 81	AI9	F	383	391	Right-handed alpha
Helix 82	AJ1	F	393	405	Right-handed alpha
Helix 83	AJ2	G	22	47	Right-handed alpha
Helix 84	AJ3	G	104	119	Right-handed alpha
Helix 85	AJ4	G	121	126	Right-handed alpha
Helix 86	AJ5	G	126	142	Right-handed alpha
Helix 87	AJ6	G	151	165	Right-handed alpha
Helix 88	AJ7	G	168	177	Right-handed alpha
Helix 89	AJ8	G	235	253	Right-handed alpha
Helix 90	AJ9	G	259	283	Right-handed alpha
Helix 91	AK1	G	284	287	Right-handed 310
Helix 92	AK2	G	312	343	Right-handed alpha
Helix 93	AK3	G	352	359	Right-handed alpha
Helix 94	AK4	G	367	379	Right-handed alpha
Helix 95	AK5	G	382	390	Right-handed alpha
Helix 96	AK6	G	393	405	Right-handed alpha

There are 7 sheets in PDB entry 8DXO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	54	56	first strand
Strand 2	A	306	309	anti-parallel
Strand 3	A	290	291	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	56	first strand
Strand 2	B	305	309	anti-parallel
Strand 3	B	290	294	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	53	56	first strand
Strand 2	C	305	309	anti-parallel
Strand 3	C	290	294	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	52	56	first strand
Strand 2	D	305	310	anti-parallel
Strand 3	D	290	294	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	52	56	first strand
Strand 2	E	305	310	anti-parallel
Strand 3	E	290	294	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	53	56	first strand
Strand 2	F	305	309	anti-parallel
Strand 3	F	290	294	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	53	56	first strand
Strand 2	G	306	309	anti-parallel
Strand 3	G	291	293	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8DXO

Analysis of interatomic Contacts of Structural Units in PDB entry:
8DXO