Analysis of interatomic Contacts of Structural Units in PDB entry:
8DXQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8DXQ entry

There are 7 chains in PDB entry 8DXQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 16	LEU 405
B	ALA 16	LEU 405
C	ALA 16	LEU 405
D	PRO 15	LEU 405
E	ALA 16	LEU 405
F	ALA 16	LEU 405
G	ALA 16	LEU 405

There are 94 helices in PDB entry 8DXQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	22	25	Right-handed 310
Helix 2	AA2	A	26	48	Right-handed alpha
Helix 3	AA3	A	106	119	Right-handed alpha
Helix 4	AA4	A	121	126	Right-handed alpha
Helix 5	AA5	A	126	144	Right-handed alpha
Helix 6	AA6	A	151	167	Right-handed alpha
Helix 7	AA7	A	168	176	Right-handed alpha
Helix 8	AA8	A	235	252	Right-handed alpha
Helix 9	AA9	A	260	283	Right-handed alpha
Helix 10	AB1	A	313	342	Right-handed alpha
Helix 11	AB2	A	352	359	Right-handed alpha
Helix 12	AB3	A	368	378	Right-handed alpha
Helix 13	AB4	A	383	392	Right-handed alpha
Helix 14	AB5	A	393	404	Right-handed alpha
Helix 15	AB6	B	23	48	Right-handed alpha
Helix 16	AB7	B	106	120	Right-handed alpha
Helix 17	AB8	B	121	140	Right-handed alpha
Helix 18	AB9	B	152	165	Right-handed alpha
Helix 19	AC1	B	168	175	Right-handed alpha
Helix 20	AC2	B	232	252	Right-handed alpha
Helix 21	AC3	B	259	284	Right-handed alpha
Helix 22	AC4	B	297	302	Right-handed alpha
Helix 23	AC5	B	314	341	Right-handed alpha
Helix 24	AC6	B	351	359	Right-handed alpha
Helix 25	AC7	B	367	379	Right-handed alpha
Helix 26	AC8	B	383	391	Right-handed alpha
Helix 27	AC9	B	394	404	Right-handed alpha
Helix 28	AD1	C	22	49	Right-handed alpha
Helix 29	AD2	C	106	119	Right-handed alpha
Helix 30	AD3	C	121	144	Right-handed alpha
Helix 31	AD4	C	151	166	Right-handed alpha
Helix 32	AD5	C	168	175	Right-handed alpha
Helix 33	AD6	C	232	252	Right-handed alpha
Helix 34	AD7	C	257	260	Right-handed 310
Helix 35	AD8	C	261	284	Right-handed alpha
Helix 36	AD9	C	313	338	Right-handed alpha
Helix 37	AE1	C	351	359	Right-handed alpha
Helix 38	AE2	C	367	378	Right-handed alpha
Helix 39	AE3	C	383	391	Right-handed alpha
Helix 40	AE4	C	393	405	Right-handed alpha
Helix 41	AE5	D	22	47	Right-handed alpha
Helix 42	AE6	D	106	116	Right-handed alpha
Helix 43	AE7	D	121	126	Right-handed alpha
Helix 44	AE8	D	126	143	Right-handed alpha
Helix 45	AE9	D	148	167	Right-handed alpha
Helix 46	AF1	D	168	177	Right-handed alpha
Helix 47	AF2	D	236	252	Right-handed alpha
Helix 48	AF3	D	260	283	Right-handed alpha
Helix 49	AF4	D	313	340	Right-handed alpha
Helix 50	AF5	D	351	359	Right-handed alpha
Helix 51	AF6	D	367	381	Right-handed alpha
Helix 52	AF7	D	383	390	Right-handed alpha
Helix 53	AF8	D	393	405	Right-handed alpha
Helix 54	AF9	E	16	21	Right-handed 310
Helix 55	AG1	E	22	50	Right-handed alpha
Helix 56	AG2	E	106	119	Right-handed alpha
Helix 57	AG3	E	121	126	Right-handed alpha
Helix 58	AG4	E	126	142	Right-handed alpha
Helix 59	AG5	E	151	167	Right-handed alpha
Helix 60	AG6	E	168	175	Right-handed alpha
Helix 61	AG7	E	232	253	Right-handed alpha
Helix 62	AG8	E	260	283	Right-handed alpha
Helix 63	AG9	E	313	344	Right-handed alpha
Helix 64	AH1	E	351	359	Right-handed alpha
Helix 65	AH2	E	367	381	Right-handed alpha
Helix 66	AH3	E	383	391	Right-handed alpha
Helix 67	AH4	E	393	405	Right-handed alpha
Helix 68	AH5	F	16	20	Right-handed 310
Helix 69	AH6	F	22	48	Right-handed alpha
Helix 70	AH7	F	106	116	Right-handed alpha
Helix 71	AH8	F	121	126	Right-handed alpha
Helix 72	AH9	F	127	143	Right-handed alpha
Helix 73	AI1	F	151	167	Right-handed alpha
Helix 74	AI2	F	168	176	Right-handed alpha
Helix 75	AI3	F	232	253	Right-handed alpha
Helix 76	AI4	F	259	283	Right-handed alpha
Helix 77	AI5	F	313	342	Right-handed alpha
Helix 78	AI6	F	351	359	Right-handed alpha
Helix 79	AI7	F	368	378	Right-handed alpha
Helix 80	AI8	F	383	391	Right-handed alpha
Helix 81	AI9	F	393	405	Right-handed alpha
Helix 82	AJ1	G	16	20	Right-handed 310
Helix 83	AJ2	G	22	47	Right-handed alpha
Helix 84	AJ3	G	104	119	Right-handed alpha
Helix 85	AJ4	G	126	141	Right-handed alpha
Helix 86	AJ5	G	151	165	Right-handed alpha
Helix 87	AJ6	G	168	177	Right-handed alpha
Helix 88	AJ7	G	235	254	Right-handed alpha
Helix 89	AJ8	G	260	283	Right-handed alpha
Helix 90	AJ9	G	312	342	Right-handed alpha
Helix 91	AK1	G	351	359	Right-handed alpha
Helix 92	AK2	G	367	379	Right-handed alpha
Helix 93	AK3	G	381	390	Right-handed alpha
Helix 94	AK4	G	393	405	Right-handed alpha

There are 8 sheets in PDB entry 8DXQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	55	56	first strand
Strand 2	A	306	309	anti-parallel
Strand 3	A	290	291	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	55	56	first strand
Strand 2	B	306	309	anti-parallel
Strand 3	B	290	293	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	55	56	first strand
Strand 2	C	305	309	anti-parallel
Strand 3	C	290	294	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	53	56	first strand
Strand 2	D	305	309	anti-parallel
Strand 3	D	290	294	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	52	56	first strand
Strand 2	E	305	310	anti-parallel
Strand 3	E	290	294	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	55	56	first strand
Strand 2	F	306	309	anti-parallel
Strand 3	F	290	293	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	348	349	first strand
Strand 2	F	366	367	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	53	56	first strand
Strand 2	G	306	309	anti-parallel
Strand 3	G	291	293	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8DXQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
8DXQ