Analysis of interatomic Contacts of Structural Units in PDB entry:
8DXU

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8DXU entry

There are 5 chains in PDB entry 8DXU (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
R	THR 333	LYS 528
H	GLN 1	SER 219
L	ASN 1	GLY 212
A	GLN 1	LYS 221
B	SER 1	THR 213

There are 23 helices in PDB entry 8DXU. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	R	337	343	Right-handed alpha
Helix 2	AA2	R	365	370	Right-handed alpha
Helix 3	AA3	R	384	389	Right-handed 310
Helix 4	AA4	R	405	410	Right-handed 310
Helix 5	AA5	R	416	422	Right-handed alpha
Helix 6	AA6	R	438	443	Right-handed alpha
Helix 7	AA7	R	502	505	Right-handed 310
Helix 8	AA8	H	28	32	Right-handed 310
Helix 9	AA9	H	87	91	Right-handed 310
Helix 10	AB1	H	160	162	Right-handed 310
Helix 11	AB2	H	191	194	Right-handed 310
Helix 12	AB3	H	205	208	Right-handed 310
Helix 13	AB4	L	79	83	Right-handed 310
Helix 14	AB5	L	121	128	Right-handed alpha
Helix 15	AB6	L	183	187	Right-handed alpha
Helix 16	AB7	A	28	32	Right-handed 310
Helix 17	AB8	A	62	65	Right-handed 310
Helix 18	AB9	A	87	91	Right-handed 310
Helix 19	AC1	A	134	138	Right-handed 310
Helix 20	AC2	A	208	211	Right-handed 310
Helix 21	AC3	B	26	30	Right-handed 310
Helix 22	AC4	B	125	131	Right-handed alpha
Helix 23	AC5	B	185	192	Right-handed alpha

There are 27 sheets in PDB entry 8DXU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	354	358	first strand
Strand 2	R	391	403	anti-parallel
Strand 3	R	523	525	anti-parallel
Strand 4	R	361	362	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	354	358	first strand
Strand 2	R	391	403	anti-parallel
Strand 3	R	507	518	anti-parallel
Strand 4	R	431	437	anti-parallel
Strand 5	R	376	380	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	452	454	first strand
Strand 2	R	492	494	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	473	474	first strand
Strand 2	R	488	489	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	78	83	anti-parallel
Strand 4	H	68	73	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	111	115	parallel
Strand 3	H	92	100	anti-parallel
Strand 4	H	33	39	anti-parallel
Strand 5	H	45	52	anti-parallel
Strand 6	H	55	60	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	111	115	parallel
Strand 3	H	92	100	anti-parallel
Strand 4	H	103	107	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	124	128	first strand
Strand 2	H	139	149	anti-parallel
Strand 3	H	180	189	anti-parallel
Strand 4	H	167	169	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	124	128	first strand
Strand 2	H	139	149	anti-parallel
Strand 3	H	180	189	anti-parallel
Strand 4	H	173	174	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	155	158	first strand
Strand 2	H	199	204	anti-parallel
Strand 3	H	209	214	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	7	first strand
Strand 2	L	19	25	anti-parallel
Strand 3	L	70	75	anti-parallel
Strand 4	L	62	67	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	102	106	parallel
Strand 3	L	85	90	anti-parallel
Strand 4	L	33	38	anti-parallel
Strand 5	L	45	49	anti-parallel
Strand 6	L	53	54	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	102	106	parallel
Strand 3	L	85	90	anti-parallel
Strand 4	L	97	98	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	114	118	first strand
Strand 2	L	129	139	anti-parallel
Strand 3	L	173	182	anti-parallel
Strand 4	L	159	163	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	153	154	first strand
Strand 2	L	144	150	anti-parallel
Strand 3	L	191	198	anti-parallel
Strand 4	L	205	210	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4	6	first strand
Strand 2	A	18	24	anti-parallel
Strand 3	A	78	83	anti-parallel
Strand 4	A	68	73	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	12	first strand
Strand 2	A	114	118	parallel
Strand 3	A	92	99	anti-parallel
Strand 4	A	34	39	anti-parallel
Strand 5	A	45	51	anti-parallel
Strand 6	A	58	60	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	12	first strand
Strand 2	A	114	118	parallel
Strand 3	A	92	99	anti-parallel
Strand 4	A	107	110	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	127	131	first strand
Strand 2	A	142	152	anti-parallel
Strand 3	A	183	192	anti-parallel
Strand 4	A	170	172	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	127	131	first strand
Strand 2	A	142	152	anti-parallel
Strand 3	A	183	192	anti-parallel
Strand 4	A	176	177	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	158	161	first strand
Strand 2	A	202	207	anti-parallel
Strand 3	A	212	217	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	9	11	first strand
Strand 2	B	105	108	parallel
Strand 3	B	84	91	anti-parallel
Strand 4	B	33	37	anti-parallel
Strand 5	B	44	47	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	9	11	first strand
Strand 2	B	105	108	parallel
Strand 3	B	84	91	anti-parallel
Strand 4	B	98	101	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	18	23	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	61	65	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	118	122	first strand
Strand 2	B	134	143	anti-parallel
Strand 3	B	176	184	anti-parallel
Strand 4	B	163	165	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	118	122	first strand
Strand 2	B	134	143	anti-parallel
Strand 3	B	176	184	anti-parallel
Strand 4	B	169	170	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	157	158	first strand
Strand 2	B	149	154	anti-parallel
Strand 3	B	195	201	anti-parallel
Strand 4	B	204	210	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8DXU

Analysis of interatomic Contacts of Structural Units in PDB entry:
8DXU