Analysis of interatomic Contacts of Structural Units in PDB entry:
8DY1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8DY1 entry

There are 4 chains in PDB entry 8DY1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 19	HIS 129
B	PRO 19	VAL 131
C	ASN 1	SER 247
D	ASN 1	SER 248

There are 11 helices in PDB entry 8DY1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	42	47	Right-handed alpha
Helix 2	AA2	B	42	47	Right-handed alpha
Helix 3	AA3	C	28	32	Right-handed 310
Helix 4	AA4	C	82	86	Right-handed 310
Helix 5	AA5	C	158	162	Right-handed 310
Helix 6	AA6	C	217	221	Right-handed 310
Helix 7	AA7	D	28	32	Right-handed 310
Helix 8	AA8	D	82	86	Right-handed 310
Helix 9	AA9	D	158	162	Right-handed 310
Helix 10	AB1	D	192	195	Right-handed 310
Helix 11	AB2	D	217	221	Right-handed 310

There are 18 sheets in PDB entry 8DY1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	21	25	first strand
Strand 2	B	21	25	anti-parallel
Strand 3	A	109	124	parallel
Strand 4	A	88	101	anti-parallel
Strand 5	A	61	62	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	51	57	first strand
Strand 2	A	65	71	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	76	77	first strand
Strand 2	A	83	84	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	51	56	first strand
Strand 2	B	66	71	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	76	77	first strand
Strand 2	B	83	84	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	88	99	first strand
Strand 2	B	112	124	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4	5	first strand
Strand 2	C	18	24	anti-parallel
Strand 3	C	73	78	anti-parallel
Strand 4	C	63	68	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	9	12	first strand
Strand 2	C	105	109	parallel
Strand 3	C	87	94	anti-parallel
Strand 4	C	35	39	anti-parallel
Strand 5	C	46	49	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	9	12	first strand
Strand 2	C	105	109	parallel
Strand 3	C	87	94	anti-parallel
Strand 4	C	99	101	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	133	137	first strand
Strand 2	C	148	155	anti-parallel
Strand 3	C	208	213	anti-parallel
Strand 4	C	198	203	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	141	142	first strand
Strand 2	C	242	246	parallel
Strand 3	C	222	231	anti-parallel
Strand 4	C	163	169	anti-parallel
Strand 5	C	175	181	anti-parallel
Strand 6	C	188	190	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	141	142	first strand
Strand 2	C	242	246	parallel
Strand 3	C	222	231	anti-parallel
Strand 4	C	234	238	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	5	first strand
Strand 2	D	18	24	anti-parallel
Strand 3	D	73	78	anti-parallel
Strand 4	D	63	68	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	9	12	first strand
Strand 2	D	105	109	parallel
Strand 3	D	87	94	anti-parallel
Strand 4	D	35	39	anti-parallel
Strand 5	D	46	49	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	9	12	first strand
Strand 2	D	105	109	parallel
Strand 3	D	87	94	anti-parallel
Strand 4	D	99	101	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	133	137	first strand
Strand 2	D	148	155	anti-parallel
Strand 3	D	208	213	anti-parallel
Strand 4	D	198	203	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	141	142	first strand
Strand 2	D	242	246	parallel
Strand 3	D	222	231	anti-parallel
Strand 4	D	163	169	anti-parallel
Strand 5	D	176	181	anti-parallel
Strand 6	D	188	190	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	141	142	first strand
Strand 2	D	242	246	parallel
Strand 3	D	222	231	anti-parallel
Strand 4	D	234	238	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8DY1

Analysis of interatomic Contacts of Structural Units in PDB entry:
8DY1