Analysis of interatomic Contacts of Structural Units in PDB entry:
8DY5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8DY5 entry

There are 4 chains in PDB entry 8DY5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 1SER 244
B
 ASN 1SER 244
C
 ARG 20VAL 128
D
 ARG 20VAL 131
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 8DY5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
28 32Right-handed 310
Helix 2
AA2
A
82 86Right-handed 310
Helix 3
AA3
A
154 158Right-handed 310
Helix 4
AA4
A
188 191Right-handed 310
Helix 5
AA5
A
200 202Right-handed 310
Helix 6
AA6
A
213 217Right-handed 310
Helix 7
AA7
B
28 32Right-handed 310
Helix 8
AA8
B
69 71Right-handed 310
Helix 9
AA9
B
82 86Right-handed 310
Helix 10
AB1
B
154 158Right-handed 310
Helix 11
AB2
B
213 217Right-handed 310
Helix 12
AB3
C
36 40Right-handed 310
Helix 13
AB4
C
42 47Right-handed alpha
Helix 14
AB5
D
37 41Right-handed alpha
Helix 15
AB6
D
42 47Right-handed alpha
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There are 18 sheets in PDB entry 8DY5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 5first strand
Strand 2
A
18 24anti-parallel
Strand 3
A
73 78anti-parallel
Strand 4
A
63 68anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 12first strand
Strand 2
A
105 109parallel
Strand 3
A
87 94anti-parallel
Strand 4
A
35 39anti-parallel
Strand 5
A
46 49anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 12first strand
Strand 2
A
105 109parallel
Strand 3
A
87 94anti-parallel
Strand 4
A
99 101anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
129 133first strand
Strand 2
A
144 151anti-parallel
Strand 3
A
204 209anti-parallel
Strand 4
A
194 199anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
137 138first strand
Strand 2
A
238 242parallel
Strand 3
A
218 227anti-parallel
Strand 4
A
159 165anti-parallel
Strand 5
A
172 177anti-parallel
Strand 6
A
184 186anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
137 138first strand
Strand 2
A
238 242parallel
Strand 3
A
218 227anti-parallel
Strand 4
A
230 234anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 5first strand
Strand 2
B
18 24anti-parallel
Strand 3
B
73 78anti-parallel
Strand 4
B
63 68anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
9 12first strand
Strand 2
B
105 109parallel
Strand 3
B
87 94anti-parallel
Strand 4
B
35 39anti-parallel
Strand 5
B
46 49anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
9 12first strand
Strand 2
B
105 109parallel
Strand 3
B
87 94anti-parallel
Strand 4
B
99 101anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
129 133first strand
Strand 2
B
144 151anti-parallel
Strand 3
B
204 209anti-parallel
Strand 4
B
194 199anti-parallel
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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
137 138first strand
Strand 2
B
238 242parallel
Strand 3
B
218 227anti-parallel
Strand 4
B
159 165anti-parallel
Strand 5
B
171 177anti-parallel
Strand 6
B
184 186anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
137 138first strand
Strand 2
B
238 242parallel
Strand 3
B
218 227anti-parallel
Strand 4
B
230 234anti-parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
51 57first strand
Strand 2
C
65 71anti-parallel
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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
61 62first strand
Strand 2
C
88 100anti-parallel
Strand 3
C
112 124anti-parallel
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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
76 77first strand
Strand 2
C
83 84anti-parallel
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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
51 57first strand
Strand 2
D
65 71anti-parallel
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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
61 62first strand
Strand 2
D
88 100anti-parallel
Strand 3
D
111 124anti-parallel
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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
76 77first strand
Strand 2
D
83 84anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il