Analysis of interatomic Contacts of Structural Units in PDB entry:
8DY9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8DY9 entry

There are 13 chains in PDB entry 8DY9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 2	ASN 226
B	MET 1	ALA 319
C	ALA 33	ARG 1150
D	ASP 2	MET 1265
E	GLU 9	ILE 85
F	ALA 212	LEU 514
G	ALA 5	SER 108
H	GLU 11	ALA 85
I	MET 1	LYS 303
O	C 11	C 48
P	G 2	G 39
Q	G 1	T 43
R	A 7	C 49

There are131 helices in PDB entry 8DY9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	30	45	Right-handed alpha
Helix 2	AA2	A	72	81	Right-handed alpha
Helix 3	AA3	A	149	153	Right-handed 310
Helix 4	AA4	A	203	224	Right-handed alpha
Helix 5	AA5	B	35	45	Right-handed alpha
Helix 6	AA6	B	72	82	Right-handed alpha
Helix 7	AA7	B	203	224	Right-handed alpha
Helix 8	AA8	B	237	244	Right-handed alpha
Helix 9	AA9	B	257	266	Right-handed alpha
Helix 10	AB1	B	271	277	Right-handed alpha
Helix 11	AB2	B	278	286	Right-handed alpha
Helix 12	AB3	B	292	299	Right-handed alpha
Helix 13	AB4	C	55	67	Right-handed alpha
Helix 14	AB5	C	68	77	Right-handed alpha
Helix 15	AB6	C	89	99	Right-handed alpha
Helix 16	AB7	C	123	131	Right-handed alpha
Helix 17	AB8	C	238	247	Right-handed alpha
Helix 18	AB9	C	249	257	Right-handed alpha
Helix 19	AC1	C	260	269	Right-handed alpha
Helix 20	AC2	C	274	287	Right-handed alpha
Helix 21	AC3	C	293	305	Right-handed alpha
Helix 22	AC4	C	314	326	Right-handed alpha
Helix 23	AC5	C	337	354	Right-handed alpha
Helix 24	AC6	C	383	410	Right-handed alpha
Helix 25	AC7	C	416	421	Right-handed alpha
Helix 26	AC8	C	423	435	Right-handed alpha
Helix 27	AC9	C	447	455	Right-handed alpha
Helix 28	AD1	C	535	542	Right-handed alpha
Helix 29	AD2	C	593	597	Right-handed 310
Helix 30	AD3	C	599	603	Right-handed 310
Helix 31	AD4	C	604	615	Right-handed alpha
Helix 32	AD5	C	633	641	Right-handed alpha
Helix 33	AD6	C	742	747	Right-handed alpha
Helix 34	AD7	C	780	786	Right-handed 310
Helix 35	AD8	C	818	829	Right-handed alpha
Helix 36	AD9	C	859	861	Right-handed 310
Helix 37	AE1	C	923	929	Right-handed alpha
Helix 38	AE2	C	931	946	Right-handed alpha
Helix 39	AE3	C	954	962	Right-handed alpha
Helix 40	AE4	C	983	991	Right-handed alpha
Helix 41	AE5	C	1071	1082	Right-handed alpha
Helix 42	AE6	C	1083	1092	Right-handed alpha
Helix 43	AE7	C	1097	1111	Right-handed alpha
Helix 44	AE8	C	1120	1133	Right-handed alpha
Helix 45	AE9	D	3	7	Right-handed 310
Helix 46	AF1	D	16	24	Right-handed alpha
Helix 47	AF2	D	48	53	Right-handed alpha
Helix 48	AF3	D	84	90	Right-handed 310
Helix 49	AF4	D	104	109	Right-handed alpha
Helix 50	AF5	D	112	119	Right-handed alpha
Helix 51	AF6	D	121	130	Right-handed alpha
Helix 52	AF7	D	140	184	Right-handed alpha
Helix 53	AF8	D	190	228	Right-handed alpha
Helix 54	AF9	D	237	249	Right-handed alpha
Helix 55	AG1	D	257	267	Right-handed alpha
Helix 56	AG2	D	269	284	Right-handed alpha
Helix 57	AG3	D	286	305	Right-handed alpha
Helix 58	AG4	D	308	311	Right-handed 310
Helix 59	AG5	D	321	325	Right-handed 310
Helix 60	AG6	D	339	361	Right-handed alpha
Helix 61	AG7	D	363	383	Right-handed alpha
Helix 62	AG8	D	402	406	Right-handed 310
Helix 63	AG9	D	411	416	Right-handed alpha
Helix 64	AH1	D	445	452	Right-handed alpha
Helix 65	AH2	D	452	463	Right-handed alpha
Helix 66	AH3	D	468	479	Right-handed alpha
Helix 67	AH4	D	481	491	Right-handed alpha
Helix 68	AH5	D	505	507	Right-handed 310
Helix 69	AH6	D	528	533	Right-handed alpha
Helix 70	AH7	D	548	558	Right-handed alpha
Helix 71	AH8	D	560	564	Right-handed 310
Helix 72	AH9	D	581	589	Right-handed alpha
Helix 73	AI1	D	606	616	Right-handed alpha
Helix 74	AI2	D	662	670	Right-handed alpha
Helix 75	AI3	D	685	699	Right-handed alpha
Helix 76	AI4	D	700	721	Right-handed alpha
Helix 77	AI5	D	736	758	Right-handed alpha
Helix 78	AI6	D	761	788	Right-handed alpha
Helix 79	AI7	D	792	800	Right-handed alpha
Helix 80	AI8	D	805	813	Right-handed alpha
Helix 81	AI9	D	840	876	Right-handed alpha
Helix 82	AJ1	D	939	950	Right-handed alpha
Helix 83	AJ2	D	958	962	Right-handed 310
Helix 84	AJ3	D	969	974	Right-handed alpha
Helix 85	AJ4	D	988	999	Right-handed alpha
Helix 86	AJ5	D	1000	1004	Right-handed 310
Helix 87	AJ6	D	1022	1031	Right-handed alpha
Helix 88	AJ7	D	1100	1128	Right-handed alpha
Helix 89	AJ8	D	1133	1145	Right-handed alpha
Helix 90	AJ9	D	1166	1178	Right-handed alpha
Helix 91	AK1	D	1192	1199	Right-handed alpha
Helix 92	AK2	D	1202	1210	Right-handed alpha
Helix 93	AK3	D	1211	1223	Right-handed alpha
Helix 94	AK4	D	1230	1238	Right-handed alpha
Helix 95	AK5	D	1243	1247	Right-handed 310
Helix 96	AK6	D	1258	1265	Right-handed alpha
Helix 97	AK7	E	15	21	Right-handed alpha
Helix 98	AK8	E	25	46	Right-handed alpha
Helix 99	AK9	E	66	78	Right-handed alpha
Helix 100	AL1	F	217	227	Right-handed alpha
Helix 101	AL2	F	233	256	Right-handed alpha
Helix 102	AL3	F	261	297	Right-handed alpha
Helix 103	AL4	F	303	321	Right-handed alpha
Helix 104	AL5	F	329	350	Right-handed alpha
Helix 105	AL6	F	356	378	Right-handed alpha
Helix 106	AL7	F	382	391	Right-handed alpha
Helix 107	AL8	F	393	404	Right-handed alpha
Helix 108	AL9	F	433	454	Right-handed alpha
Helix 109	AM1	F	455	467	Right-handed alpha
Helix 110	AM2	F	475	484	Right-handed alpha
Helix 111	AM3	F	486	502	Right-handed alpha
Helix 112	AM4	F	507	512	Right-handed alpha
Helix 113	AM5	G	81	90	Right-handed alpha
Helix 114	AM6	G	91	108	Right-handed alpha
Helix 115	AM7	H	19	28	Right-handed 310
Helix 116	AM8	H	29	34	Right-handed 310
Helix 117	AM9	H	41	49	Right-handed alpha
Helix 118	AN1	H	53	65	Right-handed alpha
Helix 119	AN2	H	75	85	Right-handed alpha
Helix 120	AN3	I	2	12	Right-handed alpha
Helix 121	AN4	I	16	31	Right-handed alpha
Helix 122	AN5	I	51	65	Right-handed alpha
Helix 123	AN6	I	91	100	Right-handed alpha
Helix 124	AN7	I	120	135	Right-handed alpha
Helix 125	AN8	I	153	167	Right-handed alpha
Helix 126	AN9	I	186	198	Right-handed alpha
Helix 127	AO1	I	200	215	Right-handed alpha
Helix 128	AO2	I	225	250	Right-handed alpha
Helix 129	AO3	I	256	269	Right-handed alpha
Helix 130	AO4	I	273	280	Right-handed alpha
Helix 131	AO5	I	286	301	Right-handed alpha

There are 43 sheets in PDB entry 8DY9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	8	15	first strand
Strand 2	A	18	26	anti-parallel
Strand 3	A	190	198	anti-parallel
Strand 4	A	171	180	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	110	111	first strand
Strand 2	A	93	100	anti-parallel
Strand 3	A	133	143	anti-parallel
Strand 4	A	48	56	anti-parallel
Strand 5	A	162	163	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	85	86	first strand
Strand 2	A	117	118	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	103	106	first strand
Strand 2	A	124	128	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	145	147	first strand
Strand 2	A	166	168	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	8	15	first strand
Strand 2	B	18	26	anti-parallel
Strand 3	B	190	198	anti-parallel
Strand 4	B	171	180	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	110	111	first strand
Strand 2	B	93	100	anti-parallel
Strand 3	B	133	144	anti-parallel
Strand 4	B	47	55	anti-parallel
Strand 5	B	161	163	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	85	87	first strand
Strand 2	B	116	118	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	103	106	first strand
Strand 2	B	124	128	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	147	first strand
Strand 2	B	166	167	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	40	41	first strand
Strand 2	C	974	975	parallel
Strand 3	C	629	630	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	101	102	first strand
Strand 2	C	108	117	anti-parallel
Strand 3	C	135	146	anti-parallel
Strand 4	C	155	163	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	171	173	first strand
Strand 2	C	176	180	anti-parallel
Strand 3	C	440	442	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	379	382	first strand
Strand 2	C	182	186	anti-parallel
Strand 3	C	457	459	parallel
Strand 4	C	500	502	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	189	196	first strand
Strand 2	C	203	210	anti-parallel
Strand 3	C	217	221	anti-parallel
Strand 4	C	227	228	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	357	358	first strand
Strand 2	C	366	367	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	508	509	first strand
Strand 2	C	515	523	anti-parallel
Strand 3	C	526	534	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	508	509	first strand
Strand 2	C	515	523	anti-parallel
Strand 3	C	581	583	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	562	565	first strand
Strand 2	C	571	574	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	645	646	first strand
Strand 2	C	704	706	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	670	674	first strand
Strand 2	C	660	665	anti-parallel
Strand 3	C	651	657	anti-parallel
Strand 4	C	698	699	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	679	680	first strand
Strand 2	C	686	687	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	711	712	first strand
Strand 2	C	715	716	anti-parallel

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There are 8 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1009	1010	first strand
Strand 2	C	1025	1034	anti-parallel
Strand 3	C	887	889	anti-parallel
Strand 4	C	895	902	anti-parallel
Strand 5	C	738	741	parallel
Strand 6	C	918	920	anti-parallel
Strand 7	C	720	726	parallel
Strand 8	C	1025	1034	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	768	769	first strand
Strand 2	C	752	765	anti-parallel
Strand 3	C	868	880	anti-parallel
Strand 4	C	847	857	anti-parallel
Strand 5	C	798	800	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	771	772	first strand
Strand 2	C	808	811	anti-parallel
Strand 3	C	835	837	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	804	806	first strand
Strand 2	C	840	841	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	947	948	first strand
Strand 2	C	967	968	anti-parallel

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There are 8 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1044	1046	first strand
Strand 2	D	425	432	anti-parallel
Strand 3	D	540	544	anti-parallel
Strand 4	D	496	499	anti-parallel
Strand 5	D	509	517	anti-parallel
Strand 6	D	440	444	parallel
Strand 7	D	522	524	anti-parallel
Strand 8	D	425	432	parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1069	1070	first strand
Strand 2	D	420	421	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1138	1140	first strand
Strand 2	D	9	11	anti-parallel
Strand 3	D	1225	1226	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	93	102	first strand
Strand 2	D	313	319	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	234	235	first strand
Strand 2	D	134	139	anti-parallel
Strand 3	D	252	255	anti-parallel

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There are 5 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	408	409	first strand
Strand 2	D	335	337	parallel
Strand 3	D	328	330	anti-parallel
Strand 4	G	7	9	anti-parallel
Strand 5	F	427	428	parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	603	604	first strand
Strand 2	D	625	628	parallel
Strand 3	D	658	661	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	892	895	first strand
Strand 2	D	953	957	anti-parallel
Strand 3	D	919	920	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	924	926	first strand
Strand 2	D	929	932	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1070	1074	first strand
Strand 2	D	1056	1063	anti-parallel
Strand 3	D	1046	1053	anti-parallel
Strand 4	D	1087	1088	anti-parallel

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There are 3 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1163	1165	first strand
Strand 2	D	1147	1150	anti-parallel
Strand 3	D	1186	1189	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1253	1257	first strand
Strand 2	E	80	84	anti-parallel

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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	39	45	first strand
Strand 2	G	27	33	anti-parallel
Strand 3	G	62	65	anti-parallel
Strand 4	G	53	55	anti-parallel

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There are 3 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	32	34	first strand
Strand 2	I	43	47	anti-parallel
Strand 3	I	84	88	anti-parallel

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There are 2 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	172	176	first strand
Strand 2	I	179	183	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8DY9

Analysis of interatomic Contacts of Structural Units in PDB entry:
8DY9