Analysis of interatomic Contacts of Structural Units in PDB entry:
8DYA

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8DYA entry

There are 3 chains in PDB entry 8DYA (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 705	GLU 1150
B	VAL 705	GLU 1150
C	VAL 705	GLU 1150

There are 33 helices in PDB entry 8DYA. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	752	783	Right-handed alpha
Helix 2	AA2	A	816	826	Right-handed alpha
Helix 3	AA3	A	866	884	Right-handed alpha
Helix 4	AA4	A	898	908	Right-handed alpha
Helix 5	AA5	A	914	919	Right-handed alpha
Helix 6	AA6	A	919	941	Right-handed alpha
Helix 7	AA7	A	946	965	Right-handed alpha
Helix 8	AA8	A	978	982	Right-handed alpha
Helix 9	AA9	A	985	1032	Right-handed alpha
Helix 10	AB1	A	1116	1118	Right-handed 310
Helix 11	AB2	A	1141	1149	Right-handed alpha
Helix 12	AB3	B	752	783	Right-handed alpha
Helix 13	AB4	B	816	826	Right-handed alpha
Helix 14	AB5	B	866	884	Right-handed alpha
Helix 15	AB6	B	898	908	Right-handed alpha
Helix 16	AB7	B	914	919	Right-handed alpha
Helix 17	AB8	B	919	941	Right-handed alpha
Helix 18	AB9	B	946	965	Right-handed alpha
Helix 19	AC1	B	978	982	Right-handed alpha
Helix 20	AC2	B	985	1032	Right-handed alpha
Helix 21	AC3	B	1116	1118	Right-handed 310
Helix 22	AC4	B	1141	1149	Right-handed alpha
Helix 23	AC5	C	752	783	Right-handed alpha
Helix 24	AC6	C	816	826	Right-handed alpha
Helix 25	AC7	C	866	884	Right-handed alpha
Helix 26	AC8	C	898	908	Right-handed alpha
Helix 27	AC9	C	914	919	Right-handed alpha
Helix 28	AD1	C	919	941	Right-handed alpha
Helix 29	AD2	C	946	965	Right-handed alpha
Helix 30	AD3	C	978	982	Right-handed alpha
Helix 31	AD4	C	985	1032	Right-handed alpha
Helix 32	AD5	C	1116	1118	Right-handed 310
Helix 33	AD6	C	1141	1149	Right-handed alpha

There are 12 sheets in PDB entry 8DYA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	711	715	first strand
Strand 2	A	1072	1078	anti-parallel
Strand 3	A	1094	1097	anti-parallel
Strand 4	A	1102	1105	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	718	728	first strand
Strand 2	A	1059	1069	anti-parallel
Strand 3	A	1047	1056	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	734	735	first strand
Strand 2	A	859	860	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1120	1125	first strand
Strand 2	A	1086	1090	anti-parallel
Strand 3	A	1081	1082	anti-parallel
Strand 4	A	1133	1134	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	711	715	first strand
Strand 2	B	1072	1078	anti-parallel
Strand 3	B	1094	1097	anti-parallel
Strand 4	B	1102	1105	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	718	728	first strand
Strand 2	B	1059	1069	anti-parallel
Strand 3	B	1047	1056	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	734	735	first strand
Strand 2	B	859	860	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1120	1125	first strand
Strand 2	B	1086	1090	anti-parallel
Strand 3	B	1081	1082	anti-parallel
Strand 4	B	1133	1134	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	711	715	first strand
Strand 2	C	1072	1078	anti-parallel
Strand 3	C	1094	1097	anti-parallel
Strand 4	C	1102	1105	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	718	728	first strand
Strand 2	C	1059	1069	anti-parallel
Strand 3	C	1047	1056	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	734	735	first strand
Strand 2	C	859	860	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1120	1125	first strand
Strand 2	C	1086	1090	anti-parallel
Strand 3	C	1081	1082	anti-parallel
Strand 4	C	1133	1134	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8DYA

Analysis of interatomic Contacts of Structural Units in PDB entry:
8DYA