Analysis of interatomic Contacts of Structural Units in PDB entry:
8DYD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8DYD entry

There are 2 chains in PDB entry 8DYD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 53ARG 662
B
 GLN 44ASN 82
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 8DYD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
70 83Right-handed alpha
Helix 2
AA2
A
94 103Right-handed 310
Helix 3
AA3
A
118 130Right-handed alpha
Helix 4
AA4
A
135 157Right-handed alpha
Helix 5
AA5
A
195 211Right-handed alpha
Helix 6
AA6
A
259 263Right-handed 310
Helix 7
AA7
A
274 283Right-handed alpha
Helix 8
AA8
A
309 314Right-handed alpha
Helix 9
AA9
A
326 331Right-handed alpha
Helix 10
AB1
A
334 338Right-handed 310
Helix 11
AB2
A
339 353Right-handed alpha
Helix 12
AB3
A
372 380Right-handed alpha
Helix 13
AB4
A
382 392Right-handed alpha
Helix 14
AB5
A
457 475Right-handed alpha
Helix 15
AB6
A
489 501Right-handed alpha
Helix 16
AB7
A
508 523Right-handed alpha
Helix 17
AB8
A
528 546Right-handed alpha
Helix 18
AB9
A
559 585Right-handed alpha
Helix 19
AC1
A
617 621Right-handed 310
Helix 20
AC2
B
45 50Right-handed alpha
Helix 21
AC3
B
62 76Right-handed alpha
Helix 22
AC4
B
79 94Right-handed alpha
Helix 23
AC5
B
95 97Right-handed 310
Helix 24
AC6
B
98 111Right-handed alpha
Helix 25
AC7
B
114 123Right-handed alpha
Helix 26
AC8
B
129 133Right-handed 310
Helix 27
AC9
B
134 146Right-handed alpha
Helix 28
AD1
B
157 162Right-handed 310
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There are 8 sheets in PDB entry 8DYD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
214 217first strand
Strand 2
A
87 91parallel
Strand 3
A
57 67parallel
Strand 4
A
244 254parallel
Strand 5
A
230 238anti-parallel
Strand 6
A
219 227anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
214 217first strand
Strand 2
A
87 91parallel
Strand 3
A
57 67parallel
Strand 4
A
244 254parallel
Strand 5
A
428 437parallel
Strand 6
A
420 425anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
107 108first strand
Strand 2
A
185 190anti-parallel
Strand 3
A
171 177anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
287 288first strand
Strand 2
A
624 630anti-parallel
Strand 3
A
637 643anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
293 300first strand
Strand 2
A
400 409anti-parallel
Strand 3
A
364 367anti-parallel
Strand 4
A
317 319anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
413 414first strand
Strand 2
A
442 443parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
506 507first strand
Strand 2
A
549 550parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
99 101first strand
Strand 2
C
104 107anti-parallel
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