Analysis of interatomic Contacts of Structural Units in PDB entry:
8DYJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8DYJ entry

There is 1 chain in PDB entry 8DYJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 GLN 0GLU 707
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 8DYJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
3 14Right-handed alpha
Helix 2
AA2
B
18 23Right-handed 310
Helix 3
AA3
B
37 42Right-handed 310
Helix 4
AA4
B
78 92Right-handed alpha
Helix 5
AA5
B
102 107Right-handed alpha
Helix 6
AA6
B
113 117Right-handed 310
Helix 7
AA7
B
129 137Right-handed alpha
Helix 8
AA8
B
154 169Right-handed alpha
Helix 9
AA9
B
172 176Right-handed 310
Helix 10
AB1
B
184 190Right-handed alpha
Helix 11
AB2
B
197 216Right-handed alpha
Helix 12
AB3
B
226 233Right-handed alpha
Helix 13
AB4
B
235 257Right-handed alpha
Helix 14
AB5
B
260 265Right-handed alpha
Helix 15
AB6
B
277 301Right-handed alpha
Helix 16
AB7
B
304 309Right-handed 310
Helix 17
AB8
B
318 321Right-handed 310
Helix 18
AB9
B
327 343Right-handed alpha
Helix 19
AC1
B
361 378Right-handed alpha
Helix 20
AC2
B
380 384Right-handed 310
Helix 21
AC3
B
391 416Right-handed alpha
Helix 22
AC4
B
417 424Right-handed alpha
Helix 23
AC5
B
425 444Right-handed alpha
Helix 24
AC6
B
469 488Right-handed alpha
Helix 25
AC7
B
489 507Right-handed alpha
Helix 26
AC8
B
510 521Right-handed alpha
Helix 27
AC9
B
524 537Right-handed alpha
Helix 28
AD1
B
548 555Right-handed alpha
Helix 29
AD2
B
557 575Right-handed alpha
Helix 30
AD3
B
591 604Right-handed alpha
Helix 31
AD4
B
616 628Right-handed alpha
Helix 32
AD5
B
640 655Right-handed alpha
Helix 33
AD6
B
669 671Right-handed 310
Helix 34
AD7
B
672 680Right-handed alpha
Helix 35
AD8
B
690 706Right-handed alpha
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There are 3 sheets in PDB entry 8DYJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
24 25first strand
Strand 2
B
31 32anti-parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
219 220first strand
Strand 2
B
178 180parallel
Strand 3
B
147 149parallel
Strand 4
B
96 99parallel
Strand 5
B
69 74parallel
Strand 6
B
347 349parallel
Strand 7
B
312 316parallel
Strand 8
B
268 274parallel
Strand 9
B
222 225parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
607 610first strand
Strand 2
B
579 583parallel
Strand 3
B
631 635parallel
Strand 4
B
661 665parallel
Strand 5
B
683 685parallel
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