Analysis of interatomic Contacts of Structural Units in PDB entry:
8DYL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8DYL entry

There is 1 chain in PDB entry 8DYL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 GLN 36GLN 747
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 8DYL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
40 51Right-handed alpha
Helix 2
AA2
B
55 60Right-handed 310
Helix 3
AA3
B
74 78Right-handed 310
Helix 4
AA4
B
115 129Right-handed alpha
Helix 5
AA5
B
139 144Right-handed alpha
Helix 6
AA6
B
150 154Right-handed 310
Helix 7
AA7
B
166 174Right-handed alpha
Helix 8
AA8
B
191 206Right-handed alpha
Helix 9
AA9
B
209 213Right-handed 310
Helix 10
AB1
B
220 227Right-handed alpha
Helix 11
AB2
B
234 253Right-handed alpha
Helix 12
AB3
B
263 269Right-handed alpha
Helix 13
AB4
B
272 294Right-handed alpha
Helix 14
AB5
B
297 302Right-handed alpha
Helix 15
AB6
B
314 338Right-handed alpha
Helix 16
AB7
B
341 346Right-handed 310
Helix 17
AB8
B
364 380Right-handed alpha
Helix 18
AB9
B
398 415Right-handed alpha
Helix 19
AC1
B
417 421Right-handed 310
Helix 20
AC2
B
428 452Right-handed alpha
Helix 21
AC3
B
454 462Right-handed alpha
Helix 22
AC4
B
462 481Right-handed alpha
Helix 23
AC5
B
507 525Right-handed alpha
Helix 24
AC6
B
526 544Right-handed alpha
Helix 25
AC7
B
547 558Right-handed alpha
Helix 26
AC8
B
561 574Right-handed alpha
Helix 27
AC9
B
585 592Right-handed alpha
Helix 28
AD1
B
594 612Right-handed alpha
Helix 29
AD2
B
628 641Right-handed alpha
Helix 30
AD3
B
653 664Right-handed alpha
Helix 31
AD4
B
677 692Right-handed alpha
Helix 32
AD5
B
706 708Right-handed 310
Helix 33
AD6
B
709 717Right-handed alpha
Helix 34
AD7
B
727 746Right-handed alpha
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There are 4 sheets in PDB entry 8DYL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
61 62first strand
Strand 2
B
68 69anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
106 107first strand
Strand 2
B
384 386parallel
Strand 3
B
349 353parallel
Strand 4
B
305 311parallel
Strand 5
B
259 262parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
133 136first strand
Strand 2
B
183 186parallel
Strand 3
B
214 217parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
644 647first strand
Strand 2
B
616 620parallel
Strand 3
B
668 673parallel
Strand 4
B
698 703parallel
Strand 5
B
720 722parallel
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