Analysis of interatomic Contacts of Structural Units in PDB entry:
8DYO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8DYO entry

There are 2 chains in PDB entry 8DYO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 4VAL 1077
B
 GLY 8PHE 178
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 71 helices in PDB entry 8DYO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 15Right-handed alpha
Helix 2
AA2
A
19 26Right-handed alpha
Helix 3
AA3
A
26 31Right-handed alpha
Helix 4
AA4
A
44 48Right-handed 310
Helix 5
AA5
A
50 69Right-handed alpha
Helix 6
AA6
A
77 90Right-handed alpha
Helix 7
AA7
A
93 108Right-handed alpha
Helix 8
AA8
A
116 129Right-handed alpha
Helix 9
AA9
A
131 149Right-handed alpha
Helix 10
AB1
A
153 168Right-handed alpha
Helix 11
AB2
A
173 188Right-handed alpha
Helix 12
AB3
A
189 191Right-handed 310
Helix 13
AB4
A
201 214Right-handed alpha
Helix 14
AB5
A
217 232Right-handed alpha
Helix 15
AB6
A
243 255Right-handed alpha
Helix 16
AB7
A
261 278Right-handed alpha
Helix 17
AB8
A
280 285Right-handed alpha
Helix 18
AB9
A
287 300Right-handed alpha
Helix 19
AC1
A
328 344Right-handed alpha
Helix 20
AC2
A
348 361Right-handed alpha
Helix 21
AC3
A
365 380Right-handed alpha
Helix 22
AC4
A
384 390Right-handed alpha
Helix 23
AC5
A
397 402Right-handed alpha
Helix 24
AC6
A
408 423Right-handed alpha
Helix 25
AC7
A
426 430Right-handed 310
Helix 26
AC8
A
435 446Right-handed alpha
Helix 27
AC9
A
451 462Right-handed alpha
Helix 28
AD1
A
465 469Right-handed 310
Helix 29
AD2
A
470 475Right-handed 310
Helix 30
AD3
A
476 485Right-handed alpha
Helix 31
AD4
A
493 512Right-handed alpha
Helix 32
AD5
A
518 531Right-handed alpha
Helix 33
AD6
A
537 555Right-handed alpha
Helix 34
AD7
A
556 558Right-handed 310
Helix 35
AD8
A
559 564Right-handed alpha
Helix 36
AD9
A
568 573Right-handed alpha
Helix 37
AE1
A
585 598Right-handed alpha
Helix 38
AE2
A
605 617Right-handed alpha
Helix 39
AE3
A
670 683Right-handed alpha
Helix 40
AE4
A
691 705Right-handed alpha
Helix 41
AE5
A
710 722Right-handed alpha
Helix 42
AE6
A
723 734Right-handed alpha
Helix 43
AE7
A
737 757Right-handed alpha
Helix 44
AE8
A
765 781Right-handed alpha
Helix 45
AE9
A
783 788Right-handed 310
Helix 46
AF1
A
794 804Right-handed alpha
Helix 47
AF2
A
827 835Right-handed alpha
Helix 48
AF3
A
836 838Right-handed 310
Helix 49
AF4
A
842 846Right-handed 310
Helix 50
AF5
A
851 853Right-handed 310
Helix 51
AF6
A
854 867Right-handed alpha
Helix 52
AF7
A
871 889Right-handed alpha
Helix 53
AF8
A
890 908Right-handed alpha
Helix 54
AF9
A
916 928Right-handed alpha
Helix 55
AG1
A
931 937Right-handed alpha
Helix 56
AG2
A
937 942Right-handed alpha
Helix 57
AG3
A
945 952Right-handed 310
Helix 58
AG4
A
954 971Right-handed alpha
Helix 59
AG5
A
980 988Right-handed alpha
Helix 60
AG6
A
997 1005Right-handed alpha
Helix 61
AG7
A
1019 1031Right-handed alpha
Helix 62
AG8
A
1037 1041Right-handed 310
Helix 63
AG9
A
1045 1049Right-handed 310
Helix 64
AH1
A
1060 1065Right-handed alpha
Helix 65
AH2
A
1069 1073Right-handed 310
Helix 66
AH3
B
24 34Right-handed alpha
Helix 67
AH4
B
79 83Right-handed 310
Helix 68
AH5
B
96 114Right-handed alpha
Helix 69
AH6
B
134 138Right-handed 310
Helix 70
AH7
B
139 144Right-handed alpha
Helix 71
AH8
B
160 172Right-handed alpha
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There are 2 sheets in PDB entry 8DYO. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
12 13first strand
Strand 2
B
59 63parallel
Strand 3
B
52 56anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
16 18first strand
Strand 2
B
88 90parallel
Strand 3
B
119 121parallel
Strand 4
B
147 148parallel
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